BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH07RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1705 0.0
>3x_Contig1617
Length = 15119
Score = 1705 bits (860), Expect = 0.0
Identities = 902/911 (99%), Gaps = 4/911 (0%)
Strand = Plus / Minus
Query: 54 atagagagcacttgaaatttgtaattcaaaccaaaattgaaacagttagcctagaacgtt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 atagagagcacttgaaatttgtaattcaaaccaaaattgaaacagttagcctagaacgtt 4577
Query: 114 gaagttaccgttgctgtcgctcagtagatttaagcactgtggtggtagcagtaaatgatt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4576 gaagttaccgttgctgtcgctcagtagatttaagcactgtggtggtagcagtaaatgatt 4517
Query: 174 gaaattgtgtgtgcaattgcagcaaacacacattaggtattgtttaaatttaaagacttt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4516 gaaattgtgtgtgcaattgcagcaaacacacattaggtattgtttaaatttaaagacttt 4457
Query: 234 tcatttttgttttttttctttatttcaaccatcatgctaattgtccttttctcgccgtaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4456 tcatttttgttttttttctttatttcaaccatcatgctaattgtccttttctcgccgtaa 4397
Query: 294 attgttcaaagaagattcatcttttctctcacgtgacttcctgggaactgctacttttat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4396 attgttcaaagaagattcatcttttctctcacgtgacttcctgggaactgctacttttat 4337
Query: 354 tgggggatgccatttgtggtgtaaggaggttggggtcggaattgatattttgggaggtaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 tgggggatgccatttgtggtgtaaggaggttggggtcggaattgatattttgggaggtaa 4277
Query: 414 atctcaatcattgggcttttatgctcatagtaagatatatgtgtatatattgttatcata 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 atctcaatcattgggcttttatgctcatagtaagatatatgtgtatatattgttatcata 4217
Query: 474 taggattgagaccatggtttatatagataaaaccattgtcccggcagtatttgacgagca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4216 taggattgagaccatggtttatatagataaaaccattgtcccggcagtatttgacgagca 4157
Query: 534 gcaattgggaataacttaactggaccatatctaatcaaaatcttctgacaacatagttaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 gcaattgggaataacttaactggaccatatctaatcaaaatcttctgacaacatagttaa 4097
Query: 594 ttaccaccctcggaatctgtgttttttgtttacttatggaccctctagcagaatataagg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4096 ttaccaccctcggaatctgtgttttttgtttacttatggaccctctagcagaatataagg 4037
Query: 654 aatcggtccaggatcgcctcgaaaaggctgacttggccgtacaaggggtgttaaacgaga 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4036 aatcggtccaggatcgcctcgaaaaggctgacttggccgtacaaggggtgttaaacgaga 3977
Query: 714 atgtgaagctgatgagacaattagagttgaaacaacaggagatagaatctttgaaggaac 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3976 atgtgaagctgatgagacaattagagttgaaacaacaggagatagaatctttgaaggaac 3917
Query: 774 aaattgca-tccgataagacaaagatttctcaattggaggattcgaaagcggacgcagag 832
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3916 aa-ttgcaatccgataagacaaagatttctcaattggaggattcgaaagcggacgcagag 3858
Query: 833 gaacaatctgagataatgaaagatttattcgagcaatttgtgtggagttaggatacataa 892
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 3857 gaacaatctgagataatgaaagatttattcgagcaa-ttgtgtggagtaaggatacataa 3799
Query: 893 gacatatgaggatgatctagggctggggnttgata-cagtcaagggaacagaaatgggat 951
||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||
Sbjct: 3798 gacatatgaggatgatctagggctgtggtttgataccagtcaagggaacaagaatgggat 3739
Query: 952 aatggattaca 962
|||||||||||
Sbjct: 3738 aatggattaca 3728
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8627
Number of Sequences: 1807
Number of extensions: 8627
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)