BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC21ZH08FM1.SCF screened BAC_end (975 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig868 1047 0.0 >3x_Contig868 Length = 3693 Score = 1047 bits (528), Expect = 0.0 Identities = 573/585 (97%), Gaps = 3/585 (0%) Strand = Plus / Plus Query: 390 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69 Query: 450 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129 Query: 510 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 189 Query: 570 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 249 Query: 630 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 309 Query: 690 aatgattagcggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctca 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 aatgattagcggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctca 369 Query: 750 tctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttcag 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 370 tctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttcag 429 Query: 810 ttggtagtgtgaattttcacggtgaatcaacactaaacgatagatcgatgattacaaaac 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 430 ttggtagtgtgaattttcacggtgaatcaacactaaacgatagatcgatgattacaaaac 489 Query: 870 gggtctatgttggtttctgttgacagtaatcaanatgattgttttgcanaattgtatgcc 929 ||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||| Sbjct: 490 gggtctatgttgg-ttctgtgaccagtaatcaggatgattgttttgcagaattgtatgcc 548 Query: 930 agattcttgaaattt-gtaaagtag-tgatgaatcgnaatcgttc 972 ||||| |||||||| ||||||||| |||||||||| |||||||| Sbjct: 549 agatttctgaaatttggtaaagtagttgatgaatcgaaatcgttc 593 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7851 Number of Sequences: 1807 Number of extensions: 7851 Number of successful extensions: 434 Number of sequences better than 1.0e-20: 1 length of query: 975 length of database: 10,358,551 effective HSP length: 16 effective length of query: 959 effective length of database: 10,329,639 effective search space: 9906123801 effective search space used: 9906123801 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)