BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH08RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1742 0.0
>3x_Contig1509
Length = 8584
Score = 1742 bits (879), Expect = 0.0
Identities = 923/934 (98%), Gaps = 3/934 (0%)
Strand = Plus / Minus
Query: 45 gctttaaaatgcggttcacttcatttctgttagaatacaaatatctgcatcgaaaatttt 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7058 gctttaaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaatttt 6999
Query: 105 cgactgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6998 cgactgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaa 6939
Query: 165 tagaccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttcctt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6938 tagaccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttcctt 6879
Query: 225 ttcttcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccacc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6878 ttcttcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccacc 6819
Query: 285 agctgggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttacc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6818 agctgggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttacc 6759
Query: 345 ttccaaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6758 ttccaaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttc 6699
Query: 405 aagaacgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6698 aagaacgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaa 6639
Query: 465 gtaagctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6638 gtaagctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagca 6579
Query: 525 agaagcagactattccttggtctattaggaaatatgataataaataaataacaaaccaga 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6578 agaagcagactattccttggtctattaggaaatatgataataaataaataacaaaccaga 6519
Query: 585 aagaacaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6518 aagaacaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttg 6459
Query: 645 tattaagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6458 tattaagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatc 6399
Query: 705 caagaaactttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgacca 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6398 caagaaactttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgacca 6339
Query: 765 ctcgctaattgttggttgtctcatg-aaaaagttactaatcattatacacggnaatacca 823
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 6338 ctcgctaattgttggttgtctcatgaaaaaagttactaatcattatacacggaaatacaa 6279
Query: 824 ccacaacgatatttgaatctaagagtgccacgtcatatatacatccgggtaacattcgta 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6278 ccacaacgatatttgaatctaagagtgccacgtcatatatacatccgggtaacattcgta 6219
Query: 884 aattctgtttcgcattttctttctttttggactcttggatcgcacgcagttttcatttta 943
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 6218 aattctgtttcgcattctctttctttttggactcttggatcgcacgcagtttcca-ttta 6160
Query: 944 aaagatcac-aatatattccgcagcagtgatact 976
|||||||| ||||||||||||||||||||||||
Sbjct: 6159 gaagatcacaaatatattccgcagcagtgatact 6126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,753
Number of Sequences: 1807
Number of extensions: 12753
Number of successful extensions: 312
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)