BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC21ZH09FM1.SCF screened BAC_end (1029 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig868 280 5e-75 >3x_Contig868 Length = 3693 Score = 280 bits (141), Expect = 5e-75 Identities = 194/209 (92%), Gaps = 2/209 (0%) Strand = Plus / Plus Query: 397 cttcagattctcttaatggattatccaaagagtttggccattgcgccaatggataatcag 456 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69 Query: 457 tagaggcgtccattacttcagaatttccttactatcaagttctcgaacttgtaaggaatc 516 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129 Query: 517 tttttctgctgagtttcccacacttattcgggttcagttatgtatattgttcgtttatac 576 ||| |||||||||||||||||||||||||| ||||| ||||| |||||||||| | || Sbjct: 130 ctttcgtgctgagtttcccacacttattcggg-tcagtaatgtaaattgttcgttaacac 188 Query: 577 cattgctattgttttatttccttcaaatt 605 ||| ||||||||| |||||||||||| Sbjct: 189 catgcaaattgtttta-ttccttcaaatt 216 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,206 Number of Sequences: 1807 Number of extensions: 11206 Number of successful extensions: 182 Number of sequences better than 1.0e-20: 1 length of query: 1029 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1013 effective length of database: 10,329,639 effective search space: 10463924307 effective search space used: 10463924307 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)