BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH09RM1.SCF screened BAC_end
(997 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 722 0.0
>3x_Contig1509
Length = 8584
Score = 722 bits (364), Expect = 0.0
Identities = 526/572 (91%), Gaps = 6/572 (1%)
Strand = Plus / Minus
Query: 64 agaatacaaatatcatgcatcgaaaatgttcgacgtgggaatgacataaaagaaggttta 123
|||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 7027 agaatacaaatatc-tgcatcgaaaattttcgac-tgggaatgacataaaagaaggttta 6970
Query: 124 gttaacgagtagctttgattctgtaatcgaatagaccgaaacccatgccatcgtcagata 183
|||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct: 6969 gttaacgagtagctttgattttttaatcgaatagaccgaaacccatgtcatcgtcagatt 6910
Query: 184 ctgcctgtgcttctgtcctttttttcttttttttcgtcgtcagcagaagcgccagcagca 243
|| ||| | ||||| ||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct: 6909 cttccttttcttct-tccttttcttcttccttttcttcttcagcagaagcgccagcagca 6851
Query: 244 ccagaagcagcagcagcaccagaggcaccaccagctgggacagaagccaacttggtttga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6850 ccagaagcagcagcagcaccagaggcaccaccagctgggacagaagccaacttggtttga 6791
Query: 304 ccttcagcaaccaattcttggatggtcttaccttccaaagaggtcaacaaagcttgaatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6790 ccttcagcaaccaattcttggatggtcttaccttccaaagaggtcaacaaagcttgaatc 6731
Query: 364 ttagagtctgtagcttcaacaccaacggcgttaagaacgttcttgattttagtagcggat 423
||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct: 6730 ttagagtcttcagcttcaacaccaacggcttcaagaacgttcttgatttcagtagcggat 6671
Query: 424 ggagattcaacaccaccttgagcgatcaacaagtaagctgtcaagtacttttatttttgg 483
|||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||
Sbjct: 6670 ggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtac-ttcatttctgg 6612
Query: 484 accggttttatttcgaaataatcgttttaagcaagaagcatactatttcttggtctatta 543
|||||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||
Sbjct: 6611 tccggttttattttgaaataatcgatttaagcaagaagcagactattccttggtctatta 6552
Query: 544 tgaaatactgatgat-aatgaatttcataccacaaagaactagaatcaaagagaggttta 602
|||||| |||| || ||| ||| || |||| ||||||| |||| ||||||||||||||
Sbjct: 6551 ggaaata-tgataataaataaataacaaaccagaaagaacaagaaacaaagagaggttta 6493
Query: 603 tttatttaataaatattccaattatttagcct 634
||| |||||||||||| |||||| ||||||
Sbjct: 6492 agtatataataaatattcgaattatatagcct 6461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,163
Number of Sequences: 1807
Number of extensions: 11163
Number of successful extensions: 224
Number of sequences better than 1.0e-20: 1
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)