BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH11FM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1582 0.0
>3x_Contig1428
Length = 9146
Score = 1582 bits (798), Expect = 0.0
Identities = 866/886 (97%), Gaps = 3/886 (0%)
Strand = Plus / Minus
Query: 93 ccaagtggatcagttagttaag-tcccaatcatctatcaagctagtggctagcgctctta 151
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7714 ccaagtggatcagttagttaagctcccaatcatctatcaagctagtggctagcgctctta 7655
Query: 152 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7654 ttcaaccagaaggtactcgctggactgtctcatttcccgaacagcggaatattaccgaac 7595
Query: 212 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7594 gataaacctatcgaacgatacggcggaaaacttttcaataactatggaacctgtattctc 7535
Query: 272 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7534 gagtagaatctcaattaaatggggtgaacaagagccccacgaggataccaatacatgggt 7475
Query: 332 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7474 ccttactgctggtaatgggaagttcgtagatgcaagaattgacttaaaaaccaatatacc 7415
Query: 392 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7414 acagtggttaataactggagaagaacaagaaattcctacaaaagacggctacgagttttc 7355
Query: 452 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7354 tttgaaatttgttcatgaactggattctgtacatggaaatgatcccgagcgtagtgctga 7295
Query: 512 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7294 ttttggtcatttcaaatccctgacatatagtagtagactcgaggaaggggagatgtataa 7235
Query: 572 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7234 tgtttctgaggagagagtcatgacgtataaagaaatttggcaaaccattgacccaataag 7175
Query: 632 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7174 atcttcaacagatcatctagtacccgtagagtctgatatatatgatggatctagtgtcac 7115
Query: 692 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7114 gtctattgtctgggagctgtcggacgacgccaagaataatgcacgcgggagattgatcag 7055
Query: 752 tataggaaaagttagtcaaggaattgtgggatataacggattgtttcagtgcattagaac 811
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7054 tataggaaaagttagtcaaggaattgtggaatataacggattgtttcagtgcattagaac 6995
Query: 812 gtggaataactcagtgttataccaatacggntctcatgtggnaagaatatttgggcagtt 871
|||||||||||||||| ||||||||||||| |||||||||| | ||| |||||||||||
Sbjct: 6994 gtggaataactcagtggtataccaatacggttctcatgtggaagaaatttttgggcagtt 6935
Query: 872 tatgaagggattgagcactcccaattcccaattt-catggncaagaacatatccttagac 930
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 6934 tatgaagggattgagcactcacaattcccaatttccatggcaaagaacatatccttagac 6875
Query: 931 tacctggctttgaacactttgcnagcggcaaaaagatggtttccaa 976
||||| ||||||| |||| || |||| |||||||| ||||||||
Sbjct: 6874 tacct-gctttgacaacttcgcaagcgcaaaaaagattgtttccaa 6830
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5653
Number of Sequences: 1807
Number of extensions: 5653
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)