BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC21ZH11RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1392 839 0.0
3x_Contig1081 837 0.0
>3x_Contig1392
Length = 9092
Score = 839 bits (423), Expect = 0.0
Identities = 443/447 (99%), Gaps = 2/447 (0%)
Strand = Plus / Minus
Query: 43 gcttacttgtcaaaaaacttttgttagaaaacttttgaatcctttggtatggttcgatga 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 448 gcttacttgtcaaaaaacttttgtcagaaaacttttgaatcctttggtatggttcgatga 389
Query: 103 ga-ttgcaaaaatgaatttgaggccaaaaagcgagttaacaccagattgtaaatatcgtt 161
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gacttgcaaaaatgaatttgaggccaaaaagcgagttaacaccagattgtaaatatcgtt 329
Query: 162 aaagagaaacgctgtttcagtccgttgaatcatcatagtggttggtgataatacattgaa 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaagagaaacgctgtttcagtccgttgaatcatcatagtggttggtgataatacattgaa 269
Query: 222 gctgtctctatctcatcgagattgaaaaaaaaacgaaaatttgaaccacacatgcatcag 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctgtctctatctcatcgagattgaaaaaaaaacgaaaatttgaaccacacatgcatcag 209
Query: 282 aacaccacaccaaaattgcaatgtgttggtagttttgttgacatttaatatgccaacctg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aacaccacaccaaaattgcaatgtgttggtagttttgttgacatttaatatgccaacctg 149
Query: 342 agctgttagtttccaaggccatgtaagtaggttaattgaagaatgtacttataatgtcaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 agctgttagtttccaaggccatgtaagtaggttaattgaagaatgtacttataatgtcaa 89
Query: 402 ttgacattgaatctttccctgagctgcaaaaaggcggtacttctaacactgtatccttct 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ttgacattgaatctttccctgagctgcaaaaaggcggtacttctaacactgtatccttct 29
Query: 462 catataatatgaaattaaagttatatg 488
|||||||||| |||| |||||||||||
Sbjct: 28 catataatat-aaatgaaagttatatg 3
>3x_Contig1081
Length = 6793
Score = 837 bits (422), Expect = 0.0
Identities = 482/495 (97%), Gaps = 6/495 (1%)
Strand = Plus / Plus
Query: 463 atataatatgaaattaaagttatatgagtatctgggattaatcatagggctgctcattgc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atataatatgaaattaaagttatatgagtatctgggattaatcatagggctgctcattgc 173
Query: 523 gttagaaccatcgtacatccatcccgatgagcatttccaaacattagaacccattttcac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gttagaaccatcgtacatccatcccgatgagcatttccaaacattagaacccattttcac 233
Query: 583 agcatggactggagctaaaggtactgctacatgggaatttcttccagaaaatccttgcag 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agcatggactggagctaaaggtactgctacatgggaatttcttccagaaaatccttgcag 293
Query: 643 aagtatcactattttgaggctctattatacacctctgctatggctgaatcaacatatatt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagtatcactattttgaggctctattatacacctctgctatggctgaatcaacatatatt 353
Query: 703 ccacttgaaacccttgggtctattgtatctttatcggctgcagaactatttactctatac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ccacttgaaacccttgggtctattgtatctttatcggctgcagaactatttactctatac 413
Query: 763 ggcagtggtcatattcttcctcgagttntgcgaggtctncataacgcattaaactaaagc 822
||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 414 ggcagtggtcatattcttcctcgagttttgcgaggtctccataacgcataaaactaaagc 473
Query: 823 -aaattcttcatcagaacctcatatgtcacttgggttcttcaaagccatacgttttncaa 881
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct: 474 aaaattcttcatcagaacctcatatgtcacttgggtctttcaaagccatacgttttcc-a 532
Query: 882 attcccttggaacaaataatattg-tactatttcctg-ttacttgtcaatattgcattta 939
||||||||| ||| |||||||||| ||||| |||||| ||||||||||||||||||||||
Sbjct: 533 attcccttgaaac-aataatattgttacta-ttcctgtttacttgtcaatattgcattta 590
Query: 940 cgaggtacgaagtcg 954
|||||||||||||||
Sbjct: 591 cgaggtacgaagtcg 605
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7791
Number of Sequences: 1807
Number of extensions: 7791
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 2
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)