BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZA02FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1635 1610 0.0
>3x_Contig1635
Length = 12349
Score = 1610 bits (812), Expect = 0.0
Identities = 862/871 (98%), Gaps = 7/871 (0%)
Strand = Plus / Plus
Query: 88 ggctcctgttttcgaatctgaagctcgtttctccaagaagaaggatgtaccaactttggg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10385 ggctcctgttttcgaatctgaagctcgtttctccaagaagaaggatgtaccaactttggg 10444
Query: 148 tgatatgaacacttccaaggaagacgttgaaaagttctactctttctggcacagattcga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10445 tgatatgaacacttccaaggaagacgttgaaaagttctactctttctggcacagattcga 10504
Query: 208 ctcttggagaacattcgagttcttggatgaagaagttcctgatgattcttccaacagaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10505 ctcttggagaacattcgagttcttggatgaagaagttcctgatgattcttccaacagaga 10564
Query: 268 tcacaagcgttacatcgaaagaaagaacaaggcggccagagataagaagaagactgctga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10565 tcacaagcgttacatcgaaagaaagaacaaggcggccagagataagaagaagactgctga 10624
Query: 328 caacgctcgtttggtgaaattagtcgaaagagccatgaacgaagatccacgtatcaagca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10625 caacgctcgtttggtgaaattagtcgaaagagccatgaacgaagatccacgtatcaagca 10684
Query: 388 attcaaggaagaagaaaagaaggaaaaggaaagaaagaaatgggaaagggaagccggtgc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10685 attcaaggaagaagaaaagaaggaaaaggaaagaaagaaatgggaaagggaagccggtgc 10744
Query: 448 tagagccgaagctgaagccaaggccaaggctgaagctgaagctaaggctaaggctgaagc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10745 tagagccgaagctgaagccaaggccaaggctgaagctgaagctaaggctaaggctgaagc 10804
Query: 508 ggacgctgctcaagccgcatctgccaaggttgacaaaaagaaggccaaggaagctgctaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10805 ggacgctgctcaagccgcatctgccaaggttgacaaaaagaaggccaaggaagctgctaa 10864
Query: 568 ggctgctaagaagaagaataagagaagtatccgtaacgctccaaaggatgctgattactt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10865 ggctgctaagaagaagaataagagaagtatccgtaacgctccaaaggatgctgattactt 10924
Query: 628 tggtgatgccgacaaatccactaccatcgaggaacaaactggtttgattgtcgactcttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10925 tggtgatgccgacaaatccactaccatcgaggaacaaactggtttgattgtcgactcttt 10984
Query: 688 ggacgacgaacaattggttgacgttgctgaaaagatcaagagtgatactgctgctgctaa 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10985 ggacgacgaacaattggttgacgttgctgaaaagatcaagagtgatactgctgctgctaa 11044
Query: 748 aaacatattgtctgatgcagcaaaggctttgactgacgctgggaaattaccggctgctat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11045 aaacatattgtctgatgcagcaaaggctttgactgacgctgggaaattaccggctgctat 11104
Query: 808 tgtctcttactacttataaatttaaagatgagatcagttc-aaaccagcccagaggaaat 866
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 11105 tgtctcttactacttataaatttaaagatgagatcagttcaaaaccagcccagaggaaat 11164
Query: 867 -tatagcatataacatagtctactgacattggctctgctattt-acccttcga-ttatat 923
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 11165 atatagcatataacatagtctactgacattggctctgctatttaacccttcgatttatat 11224
Query: 924 -tatatacacgt--aatctgacagctaccta 951
||||||| || |||||||||||||||||
Sbjct: 11225 atatataccagtaaaatctgacagctaccta 11255
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8949
Number of Sequences: 1807
Number of extensions: 8949
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)