BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZA02RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1693 0.0
>3x_Contig1061
Length = 4663
Score = 1693 bits (854), Expect = 0.0
Identities = 896/911 (98%)
Strand = Plus / Minus
Query: 53 aacatgagaattactttttactgcgttcagaacaagaactttgaaaatactcgatgagct 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 aacatgagaattactttttactgcgttcagaacaagaactttgaaaatactcgatgagct 1027
Query: 113 catgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtctagtgaactt 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 catgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtctagtgaactt 967
Query: 173 agaacctcttgactgtacagcaatgcccttggttttactaactggttttccgagtagcgg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 agaacctcttgactgtacagcaatgcccttggttttactaactggttttccgagtagcgg 907
Query: 233 taaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgattccaacga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 taaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgattccaacga 847
Query: 293 taaactgtcaaactattctgttgtataccattcagatgaaaccttaaacatatctcacga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 taaactgtcaaactattctgttgtataccattcagatgaaaccttaaacatatctcacga 787
Query: 353 tgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtctgtggtgaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtctgtggtgaa 727
Query: 413 gagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacataaaaggatt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacataaaaggatt 667
Query: 473 ccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttgatccacac 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttgatccacac 607
Query: 533 ggtatgcccaatgagcaacttggttgaatggaatgagaaagagactgatttgcataaacc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggtatgcccaatgagcaacttggttgaatggaatgagaaagagactgatttgcataaacc 547
Query: 593 ttgggaaagcaattttttgaatgctcttattcaaaggtatgaagaaccaaaccctcaaac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttgggaaagcaattttttgaatgctcttattcaaaggtatgaagaaccaaaccctcaaac 487
Query: 653 aaggtgggattctccattattcactatattgacgtctcaagatgacatcagtaccctata 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaggtgggattctccattattcactatattgacgtctcaagatgacatcagtaccctata 427
Query: 713 cacagatattagtaaggcaatattcccaaccgtgttcaaaccgggcacgaatgatagaga 772
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 cacagatattagtaaggcaatattcccaaccgtgttcaaaccggcaacgaatgatagaga 367
Query: 773 tactgagaagatcctgncacaattaaagccaaacaatgccacgatatttgaagctgcctc 832
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 366 tactgagaagatcctgcaacaattaaagccaaacaatgccacgatattgaaggctgcctc 307
Query: 833 tcacactaactcttttgcaatacttgacttcgaggccagtagtgtcataaagattattat 892
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 306 tcacactaactctttgcaaatacttgactccgaggccagtagtgtcataaagattataat 247
Query: 893 gaaatatatgcagcaaaatgtggtcagtggtggcacttcaaaaataatncttactnctga 952
||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||
Sbjct: 246 gaaatatatgcagcaaaatgtggtcagtggtggcacttcaagaataattcttactcctga 187
Query: 953 gaatactgatt 963
|||||||||||
Sbjct: 186 gaatactgatt 176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6660
Number of Sequences: 1807
Number of extensions: 6660
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)