BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZA04FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1715 950 0.0
>3x_Contig1715
Length = 16241
Score = 950 bits (479), Expect = 0.0
Identities = 533/549 (97%), Gaps = 2/549 (0%)
Strand = Plus / Plus
Query: 72 cacggtcatcagcttctttcaacggactgaactgtttgcccggtctatcatataacactg 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 cacggtcatcagcttctttcaacggactgaactgtttgcccggtctatcatataacactg 1556
Query: 132 ctatctttttcccatcgatgccgaatttctccaccaaatacgttttcatagctttagtca 191
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1557 ctatctttttcccatcgatgccgaatttctccaccaaatacgttntcatagctntagtca 1616
Query: 192 ccgttaaatggtaattatcaaacttggcaaaaatccattcgatcaaatacgccaagagta 251
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 ccgttaaatggtaattagcaaacttggcaaaaatccattcgatcaaatacgccaagagta 1676
Query: 252 ccaacggatgtaaaaactggtctttaaatttcatttgcaatatagtgtaacccaggttat 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 ccaacggatgtaaaaactggtctttaaatttcatttgcaatatagtgtaacccaggttat 1736
Query: 312 gccaatcgatgattaattttgcccttgaaaatgtcttaacaacaacagctattggtaaga 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 gccaatcgatgattaattttgcccttgaaaatgtcttaacaacaacagctattggtaaga 1796
Query: 372 taggaatcgttggtgggttttgcaaaaggatataatcgactgccctaagtttccagaaca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 taggaatcgttggtgggttttgcaaaaggatataatcgactgccctaagtttccagaaca 1856
Query: 432 tggaacaaagttgtaatccttgttttaatgcctttaccagtaaccctttttcagaaccat 491
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 tggaacaaagttgtaatccttgttttaatgcctttaccagtaaccctttttcagaacca- 1915
Query: 492 tatttcttcaatccatgaatttcaatatttgtcattatccagtatatcggctggaatatc 551
||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct: 1916 tatttcttcaatccatgaatttcaata-ttgtcatcatccagtatatcggttggaatatc 1974
Query: 552 tgaatcaacgcaccctgatagctctacctgatacccatttttgctgatatttcctgcatg 611
|||||||||| |||||||||||||||||||| ||||| |||||||| | ||| ||||||
Sbjct: 1975 tgaatcaacgtaccctgatagctctacctgaaacccagctttgctgaaacttcttgcatg 2034
Query: 612 tcataaaat 620
|||||||
Sbjct: 2035 gtataaaat 2043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7291
Number of Sequences: 1807
Number of extensions: 7291
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)