BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZA04RM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1433 0.0
>3x_Contig1697
Length = 16220
Score = 1433 bits (723), Expect = 0.0
Identities = 785/799 (98%), Gaps = 5/799 (0%)
Strand = Plus / Minus
Query: 42 gcttgacaaaactaaacgatattaacgataagcagatcactggacccagatactggtact 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10471 gcttgacaaaactaaacgatattaacgataagcagatcactggacccagatactggtact 10412
Query: 102 ctgcacagcgcgagatatatctatatctatatatatatatatatatattcacacaagaat 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10411 ctgcacagcgcgagatatatctatatctatatatatatatatatatattcacacaagaat 10352
Query: 162 agaacaagataatcacatcacgtgacaagagctgtacctcttccagctaaactagcatac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 10351 agaacaagataatcacatcacgtgacaagagctgtacctcttccagctaaactagcagac 10292
Query: 222 aataacttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10291 aataacttctaacaagcgcaggcgcttgatattttctagcactgggttgtaacagatgca 10232
Query: 282 gagaatgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10231 gagaatgcgaatacaaatacaactactatccaaacactcttacacaagcaaacactgccc 10172
Query: 342 tgtacttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10171 tgtacttagcagtcttttggtctgcttgctccaactcagtccttgcctagcagaatttcg 10112
Query: 402 ggaatttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaacca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10111 ggaatttgtcttcggcacaaacatgaagtaaaaaaaaaaaggcgaacccagcaaaaacca 10052
Query: 462 gtattcatgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgttt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10051 gtattcatgcgacgagatgttattcctgcatgtttggaacgtttcaaaagtgcaatgttt 9992
Query: 522 ctccgacgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9991 ctccgacgtttgtcaggagacttgcattgacaagtgttattcttgttttgtttggttgag 9932
Query: 582 ggctttcctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9931 ggctttcctgttacactatgtcgatctgtttatccatgtttcaagttccgccagttgtgt 9872
Query: 642 aagttccggtgcgcatacatgatacgaagagcgaatggtaaactaagttaaacttgcatg 701
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9871 aagttccggtgcgcaaacatgatacgaagagcgaatggtaaactaagttaaacttgcatg 9812
Query: 702 agagtttacgcagtgattttgtgctgctactgctgggttctttggtccctgtgaagaagc 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 9811 agagtttacgcagtgattttgtgctgctactgctgggttctttggtccctgtgagaatgc 9752
Query: 762 ttttgggacttgccttgtttactgtttttatttggttttgccggcgaataggaattgacg 821
|||| |||| || |||||||||||||||||||| |||||| ||| ||||||| |||||||
Sbjct: 9751 tttt-ggac-tgtcttgtttactgtttttattt-gttttgtcggtgaatagg-attgacg 9696
Query: 822 tgtggccagggaatgatag 840
| ||| |||||||||||||
Sbjct: 9695 t-tggtcagggaatgatag 9678
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,823
Number of Sequences: 1807
Number of extensions: 17823
Number of successful extensions: 2536
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)