BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZA05FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1292 1566 0.0
>3x_Contig1292
Length = 8594
Score = 1566 bits (790), Expect = 0.0
Identities = 857/873 (98%), Gaps = 5/873 (0%)
Strand = Plus / Minus
Query: 88 ttcggtctaaatgagtcagggtttttgaagtttgggttaccttcatcaatgaatgtcaaa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8290 ttcggtctaaatgagtcagggtttttgaagtttgggttaccttcatcaatgaatgtcaaa 8231
Query: 148 tcctgcaaaaacagattaaagaacggaactactggtagcacagattttgaagatagtaga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8230 tcctgcaaaaacagattaaagaacggaactactggtagcacagattttgaagatagtaga 8171
Query: 208 ccactagaagaagagctttctgtaaccagcttttcaattttttttctgtacactttgtag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8170 ccactagaagaagagctttctgtaaccagcttttcaattttttttctgtacactttgtag 8111
Query: 268 ttattatttggatgaataatcttcgaaaggtattcaaataactccacatcttcatttgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8110 ttattatttggatgaataatcttcgaaaggtattcaaataactccacatcttcatttgat 8051
Query: 328 aacataccccacaacattgaaagtctggaaatgacgtagctttgtaaagtggtcataatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8050 aacataccccacaacattgaaagtctggaaatgacgtagctttgtaaagtggtcataatg 7991
Query: 388 gacgcgagggcgttgaaatttctaaaatacagtgaagataatgcgattcttaaccaggat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7990 gacgcgagggcgttgaaatttctaaaatacagtgaagataatgcgattcttaaccaggat 7931
Query: 448 ttgattcttagggctcttttcttcagcggaataccaggcatcaaaatagattccaggacg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7930 ttgattcttagggctcttttcttcagcggaataccaggcatcaaaatagattccaggacg 7871
Query: 508 tagtttgacagtaaatttgttagggttataatactgttcacgttaggagacttggagaga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7870 tagtttgacagtaaatttgttagggttataatactgttcacgttaggagacttggagaga 7811
Query: 568 tctggattttttgaagagtacttgcactttagcagttctggtggagttattttcaagaag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7810 tctggattttttgaagagtacttgcactttagcagttctggtggagttattttcaagaag 7751
Query: 628 atcgttgattcaatcaatgatatctgtttagaaacttccagtggattcagctcagatatg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7750 atcgttgattcaatcaatgatatctgtttagaaacttccagtggattcagctcagatatg 7691
Query: 688 ttgaggtcattatggattaagtttcttggtggagcctgattcttcgaattactcaccagt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7690 ttgaggtcattatggattaagtttcttggtggagcctgattcttcgaattactcaccagt 7631
Query: 748 ttcatccactcagagatcaaattctctaagctatagtttggtacaaaattcctggtagtt 807
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7630 ttcatccactcagagatcaaattctctaagctatagtttgtaacaaaattcctggtagtt 7571
Query: 808 atggcgccattttgggaagccaaccatatctttgtatgtcaggtacatttctttctatat 867
||||||||| ||||||||||||||||||||| ||||||||| ||||| |||| |||||||
Sbjct: 7570 atggcgcca-tttgggaagccaaccatatctctgtatgtca-gtacaattctctctatat 7513
Query: 868 cagacatgtttcctcttaattaaaagtgatgaatttcctaggcttaaaat-ggaactggc 926
||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7512 cagacatgttt-ctcttagttaaaagtgatgaatttcctaggcttaaaatgggaactggc 7454
Query: 927 aaa-aaaaaatgctgtgagacaggagggnaagt 958
||| ||| | ||||||||||| ||||| ||||
Sbjct: 7453 aaagaaatagtgctgtgagacgagaggggaagt 7421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7949
Number of Sequences: 1807
Number of extensions: 7949
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)