BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZA05RM1.SCF screened BAC_end
         (960 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1421                                                        1641   0.0  

>3x_Contig1421 
          Length = 8026

 Score = 1641 bits (828), Expect = 0.0
 Identities = 901/917 (98%), Gaps = 8/917 (0%)
 Strand = Plus / Minus

                                                                        
Query: 48   ttgttagatggaagtattgaaatgtagcctttgatctctagagagaagtgatatgaacca 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 ttgttagatggaagtattgaaatgtagcctttgatctctagagagaagtgatatgaacca 2143

                                                                        
Query: 108  tcaaatcaggtaacataggccaaataatccttgagccacaccgaacttttgtcattttac 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2142 tcaaatcaggtaacataggccaaataatccttgagccacaccgaacttttgtcattttac 2083

                                                                        
Query: 168  gttctatcattgtttttatataaaaatgttacaatctaaacaaaaaataaagaaaagaca 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2082 gttctatcattgtttttatataaaaatgttacaatctaaacaaaaaataaagaaaagaca 2023

                                                                        
Query: 228  ggacttaaaaaaaaaaattccatttgactgaaaaacgcttatcagatatctgataataat 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 ggacttaaaaaaaaaaattccatttgactgaaaaacgcttatcagatatctgataataat 1963

                                                                        
Query: 288  tagtattgacaatggaattttacatgcacaacctctcgaaactgcgcagaaggcgctagc 347
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1962 tagtattgacaatggaattttacatgcacaacctctcgaaactgcgcagaagacgctagc 1903

                                                                        
Query: 348  aaattaatttgtcacttcccaaacaccccgtagctgcatatagatgtaggacatatgatt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1902 aaattaatttgtcacttcccaaacaccccgtagctgcatatagatgtaggacatatgatt 1843

                                                                        
Query: 408  atgaggtggaatttggtagccgtaggtgtattgtatatcaacaaacttgagtaataaatg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1842 atgaggtggaatttggtagccgtaggtgtattgtatatcaacaaacttgagtaataaatg 1783

                                                                        
Query: 468  tatcaattaatgaaggaataagtatatgcttgtttgagcctgacttattgagaatgcaag 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1782 tatcaattaatgaaggaataagtatatgcttgtttgagcctgacttattgagaatgcaag 1723

                                                                        
Query: 528  agcttagatgaggagatgaggagatgaggagatgagagatgagactatcgaagcggagca 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 agcttagatgaggagatgaggagatgaggagatgagagatgagactatcgaagcggagca 1663

                                                                        
Query: 588  acaatgttactcagcacgtatgtatttagaatacggttaaaataacgaaacatctcatta 647
            ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 1662 acaatgttactcagcacgtatgtatttagaatacggggaaaataacgaaacatctcatta 1603

                                                                        
Query: 648  tgatgagggaggccgattccatcataacggtattatggtgcaaagaaagttagatcaaga 707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 tgatgagggaggccgattccatcataacggtattatggtgcaaagaaagttagatcaaga 1543

                                                                        
Query: 708  atagaaataaacagaaagcattgagaacttagtaacggcgggagaaagttcaacttcaat 767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 atagaaataaacagaaagcattgagaacttagtaacggcgggagaaagttcaacttcaat 1483

                                                                        
Query: 768  gaagaaaaaacagggggaagaggggaaatcatttgatgaatcagactgatttctac--aa 825
            |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||
Sbjct: 1482 gaagaaaaaaca-ggggaagaggggaaatcatttgatgaatcagactga-ttctacaaaa 1425

                                                                        
Query: 826  aattatcaccacagtcttcanagatttagtc-agatatggaaacaaagatccgattgana 884
            |||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||| |
Sbjct: 1424 aattatcaccacagtcttcagaga-taagtcaagatatggaaacaaagatccgattgaaa 1366

                                                                        
Query: 885  aagtagtcactcatcattgataaaaataatccattagcg-tgcgataaggatg-atacac 942
            |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 1365 aagtagtcactcatcattgataaaaataatccataagcgttgcgataaggatgaatacac 1306

                             
Query: 943  ttccctatcgtgataga 959
            | |||||||||||||||
Sbjct: 1305 tcccctatcgtgataga 1289


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,968
Number of Sequences: 1807
Number of extensions: 12968
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)