BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZA07FM1.SCF screened BAC_end
         (1045 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1295                                                         844   0.0  

>3x_Contig1295 
          Length = 7117

 Score =  844 bits (426), Expect = 0.0
 Identities = 466/479 (97%), Gaps = 1/479 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   atcagctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcatt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  atcagctgtcattactttctgctcggtcagcattgatgaaaacccggctcatatctcatt 945

                                                                        
Query: 146  aacttcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgataagt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  aacttcgcctcgctcctaatgtaaagatatatacctaagaaataataaggaatgataagt 1005

                                                                        
Query: 206  gaatctatccaatattcctggtccaactattcttcaacctagttttctttcactgtgtga 265
            |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gaatctatccaaaaa-cctggtccaactattcttcaacctagttttctttcactgtgtga 1064

                                                                        
Query: 266  gtcacactattataccaaatacccatatgtaagttacatcttttttcagtgtcactatca 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 gtcacactattataccaaatacccatatgtaagttacatcttttttcagtgtcactatca 1124

                                                                        
Query: 326  aaactcctgtattgttatccataaactttagaaatacagtacagtgcgtatcccgatgta 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 aaactcctgtattgttatccataaactttagaaatacagtacagtgcgtatcccgatgta 1184

                                                                        
Query: 386  gacagaatttccggtactctacctccaacttaatgccatatgcctgcgtatcgtgacgct 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gacagaatttccggtactctacctccaacttaatgccatatgcctgcgtatcgtgacgct 1244

                                                                        
Query: 446  ttctaccgaaatgaatttcgggataatagctacatacatatatacatctcatatcttaca 505
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1245 ttcgaccgaaatgaatttcgggataatagctacatacatatatacatctcatatcttcca 1304

                                                                       
Query: 506  ccgaacaaggatgtagattgggaactcccagnncgtcactcggactttttnattcatgt 564
            |||||||||| || ||||||  |||||||||  ||||||||||||||||| || |||||
Sbjct: 1305 ccgaacaaggttggagattgttaactcccagttcgtcactcggacttttttatgcatgt 1363


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5934
Number of Sequences: 1807
Number of extensions: 5934
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 1045
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1029
effective length of database: 10,329,639
effective search space: 10629198531
effective search space used: 10629198531
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)