BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZA07RM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig197 1049 0.0
>3x_Contig197
Length = 1712
Score = 1049 bits (529), Expect = 0.0
Identities = 582/597 (97%), Gaps = 2/597 (0%)
Strand = Plus / Minus
Query: 43 gctttatattattgatgtttcgttttccgtacaaccagaacatcctatgtctctagattt 102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1480 gctttatattattgatgtttcgcaatccgtacaaccagaacatcctatgtctctagattt 1421
Query: 103 cctaagaatggatattaagaatgttaactcatatttccaaaaattgggaattgacatttt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 cctaagaatggatattaagaatgttaactcatatttccaaaaattgggaattgacatttt 1361
Query: 163 ccctgaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattcttgttttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1360 ccctgaacgggtgatcttccagttcatcatcagtgaggtcttagacaaattcaagggtga 1301
Query: 223 ttacagatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgac 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 ttacagatcaagcgatgatctagaaacatatgttgccgacaatttacctctaaagttgac 1241
Query: 283 tgatgaagactaagctgaagatgaagtgttcagatctttacatttgataagaaatttggg 342
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tgatgaagacgaagctgaagatgaagtgttcagatctttacatttgataagaaatttggg 1181
Query: 343 tggtttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tggtttagaggaaagagattttgatagattcactgatggtaaatttgacctactgaaatc 1121
Query: 403 attaattgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 attaattgctaatgaaaacaggaaatattccgaaaatttcacagcatcggagcaatatga 1061
Query: 463 actcttttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgc 522
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 actctcttcttctgatgacgaggaagatgacgtagatggtgatgatctccctaacctcgt 1001
Query: 523 aacggatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 aacggatatcaatgaagatgacatagctggatcagatgaagatgatgatagtgatgaaac 941
Query: 583 taacgatagttctgatggtgattgattgggtct-cgataaagacactccactgaaag 638
|||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 940 taacgatagttctgatggtgatgga-tgggtctccgataaagacactccactgaaag 885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9818
Number of Sequences: 1807
Number of extensions: 9818
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)