BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB04FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1513 0.0
>3x_Contig1294
Length = 6938
Score = 1513 bits (763), Expect = 0.0
Identities = 829/844 (98%), Gaps = 6/844 (0%)
Strand = Plus / Minus
Query: 88 attagccactgtattctttcttctccaatgggttaatgctaataaatatgtacagataca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 attagccactgtattctttcttctccaatgggttaatgctaataaatatgtacagataca 5865
Query: 148 tactaaaagttacaaattcaataactcaacgcaggttgaagttatccattattagtttcg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 tactaaaagttacaaattcaataactcaacgcaggttgaagttatccattattagtttcg 5805
Query: 208 ggatacagagcaccccatttatctcatcatctatcaattttagagcggatattcccatca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5804 ggatacagagcaccccatttatctcatcatctatcaattttagagcggatattcccatca 5745
Query: 268 tgctatgatatatatcagggtcatcttgatcattcttggcaaatccacccaccatcttat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5744 tgctatgatatatatcagggtcatcttgatcattcttggcaaatccacccaccatcttat 5685
Query: 328 tctgagtttgattcagtaaataatctcgtatcagtggaacatcaataagctgactccaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5684 tctgagtttgattcagtaaataatctcgtatcagtggaacatcaataagctgactccaac 5625
Query: 388 gttggggctctaagattcttaaagaatttaaacaccaaaacgcgtagcacgtatccgcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5624 gttggggctctaagattcttaaagaatttaaacaccaaaacgcgtagcacgtatccgcaa 5565
Query: 448 gtttattttctctcccgttaaacccacctgagtcatccggatcgtaatcgtcgtttaaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564 gtttattttctctcccgttaaacccacctgagtcatccggatcgtaatcgtcgtttaaat 5505
Query: 508 cctgttcaacaaagacaccaatagcagaaacctgtctgttcaccaaccaatgaagagtat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 cctgttcaacaaagacaccaatagcagaaacctgtctgttcaccaaccaatgaagagtat 5445
Query: 568 cctgcctaaacgaggcaggaatgttttgtagttgatttagtagagatagagcagataacg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5444 cctgcctaaacgaggcaggaatgttttgtagttgatttagtagagatagagcagataacg 5385
Query: 628 cgcatgatgtgtatccaccgtgtggctcgttccagtcaccaaatccccccattgtgcact 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5384 cgcatgatgtgtatccaccgtgtggctcgttccagtcaccaaatccccccattgtg-act 5326
Query: 688 gacgtgacatgatatattgtagcagcttagaaacgttaatataccgagagaaatccgatt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5325 gacgtgacatgatatattgtagcagcttagaaacgttaatataccgagagaaatccgatt 5266
Query: 748 ctgatcgacatccgataagatataggatcgatactgcaatataacagaacctcagatcat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5265 ctgatcgacatccgataagatataggatcgatactgcaatataacagaacctcagatcat 5206
Query: 808 gggaaatcgaacttcgatggatatccagcattatccagaannagagttaatgacccatca 867
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 5205 ggg-aatcgaacttcgatggatatccagcattatccagaaaagaggtaaatgacccatca 5147
Query: 868 ggtaaactgac-agatgaga-gaatttgcnc-acgtatcacggtttcacttctcatcaaa 924
||| ||||||| |||||||| |||||||| | ||||||||||||| |||||||||||||
Sbjct: 5146 ggt-aactgacaagatgagatgaatttgcccaacgtatcacggttcaacttctcatcaaa 5088
Query: 925 gaat 928
||||
Sbjct: 5087 gaat 5084
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5668
Number of Sequences: 1807
Number of extensions: 5668
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)