BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB04RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1451 0.0
>3x_Contig1690
Length = 13018
Score = 1451 bits (732), Expect = 0.0
Identities = 815/831 (98%), Gaps = 9/831 (1%)
Strand = Plus / Minus
Query: 42 gctttgtctgacccttcggtgattcaacaggtcagacaattgattgttcatgaactttgt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6929 gctttgtctgacccttcggtgattcaacaggtcagacaattgattgttcatgaactttgt 6870
Query: 102 catcaatggatgggtaactacatctcgtttgactcctgggatcatctttggtttaacgaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6869 catcaatggatgggtaactacatctcgtttgactcctgggatcatctttggtttaacgaa 6810
Query: 162 gcttttgcgacgtggttcgcatgtgacttgttggacgaacacgataatgatgtttattgg 221
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6809 gcttttgcgacgtggttcgcatgtgacttgttggacgaacacgataatgatggatattgg 6750
Query: 222 tcttcagacgtctatctaacccagatggaaaatgtcatatcaactgacgctgaagtaact 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6749 tcttcagacgtctatctaacccagatggaaaatgtcatatcaactgacgctgaagtaact 6690
Query: 282 accaagagtatcacacaaggttcggtaatcgacgtgaaatccttgcaatcaacttcagat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6689 accaagagtatcacacaaggttcggtaatcgacgtgaaatccttgcaatcaacttcagat 6630
Query: 342 gcatttgaaccacacatatatcataagggaatatcgttattgagatcactccaacaaagt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6629 gcatttgaaccacacatatatcataagggaatatcgttattgagatcactccaacaaagt 6570
Query: 402 gttgggaaagaaaacttcaacagagctctcgcccagatcttctcagagtcgtccacattc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6569 gttgggaaagaaaacttcaacagagctctcgcccagatcttctcagagtcgtccacattc 6510
Query: 462 catgaaacttgtatcaaaccaatggatatctttagaagaatgggcgagatcctaaaatcc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6509 catgaaacttgtatcaaaccaatggatatctttagaagaatgggcgagatcctaaaatcc 6450
Query: 522 gaaaacattgcaaacttctacagctcatggactaggactcctggtatcccaatcatttct 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6449 gaaaacattgcaaacttctacagctcatggactaggactcctggtatcccaatcatttct 6390
Query: 582 gtaaatactgatactgaaaggactaccttggaacagcaccgtttccttttggaaaagaca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6389 gtaaatactgatactgaaaggactaccttggaacagcaccgtttccttttggaaaagaca 6330
Query: 642 gatgttgaggacattccttaccatattccactttntgcagttcaatcttcaggagaggat 701
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6329 gatgttgaggacattccttaccatattccactttttgcagttcaatcttcaggagaggat 6270
Query: 702 gatactaagaatggattatttactgatagaactctgaaa-tatccgaacccgaacttatt 760
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6269 gatactaagaatggattatttactgatagaactctgaaattatccgaacccgaacttatt 6210
Query: 761 gtgaacagtgggagccaggggcctataccgcgtttttttatgagcacggataaatgccta 820
||||||||| |||||||||||||||||||| | ||| ||||||| ||||||||||| |||
Sbjct: 6209 gtgaacagt-ggagccaggggcctataccgtg-tttcttatgag-acggataaatg-cta 6154
Query: 821 cgagtttgatcaatgaaagccctctaagaccttttaaaatttccgatttgg 871
|||| |||||||||| |||||||| |||| | | |||||||||||||||||
Sbjct: 6153 cgag-ttgatcaatg-aagccctc-aagaac-tctaaaatttccgatttgg 6107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6611
Number of Sequences: 1807
Number of extensions: 6611
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)