BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB05RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1308 0.0
>3x_Contig1451
Length = 8346
Score = 1308 bits (660), Expect = 0.0
Identities = 663/664 (99%)
Strand = Plus / Minus
Query: 50 taaatctttgtaacactttattgagactttcatccttgataactaaaggttcattaatta 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taaatctttgtaacactttattgagactttcatccttgataactaaaggttcattaatta 605
Query: 110 cctgttgcgaggtgttgccattctctgatgacacttgttgtaacaaactggaaagcctct 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cctgttgcgaggtgttgccattctctgatgacacttgttgtaacaaactggaaagcctct 545
Query: 170 tcttcctttcttctgcatcctctttcacagatccatttttattctttgaacggcgtttat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcttcctttcttctgcatcctctttcacagatccatttttattctttgaacggcgtttat 485
Query: 230 tagccttggctttctttaccatagtgcaatatctggtgggcagttgactgttgttatatt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tagccttggctttctttaccatagtgcaatatctggtgggcagttgactgttgttatatt 425
Query: 290 aataagcagtcgagccagaatactattgtatgctcatctgtcaatttgccttttttatgt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aataagcagtcgagccagaatactattgtatgctcatctgtcaatttgccttttttatgt 365
Query: 350 cctttattaagaccacatatatttttcaattaaatgttgaaatttataccattatattat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cctttattaagaccacatatatttttcaattaaatgttgaaatttataccattatattat 305
Query: 410 acgtgaacagatatggcaacattcaacggtcttgtatacatgtgatagatgctatatgac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acgtgaacagatatggcaacattcaacggtcttgtatacatgtgatagatgctatatgac 245
Query: 470 tatggataataacgaatcactcttctaaattcttgagtctatcgttgattgaatcggcga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tatggataataacgaatcactcttctaaattcttgagtctatcgttgattgaatcggcga 185
Query: 530 atttgttaaattgtacatcatcgtcattcactttccgcagtaagtcctgtaacttttgct 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atttgttaaattgtacatcatcgtcattcactttccgcagtaagtcctgtaacttttgct 125
Query: 590 gaatatctgaggctatctcaaacacggtgggaacatcttcgttggaattaccactatttt 649
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gaatatctgaagctatctcaaacacggtgggaacatcttcgttggaattaccactatttt 65
Query: 650 ctgatccttttggttcaggggtaacaattggttgtgtcgaaatcatcttttgaagtgatg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctgatccttttggttcaggggtaacaattggttgtgtcgaaatcatcttttgaagtgatg 5
Query: 710 actg 713
||||
Sbjct: 4 actg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6590
Number of Sequences: 1807
Number of extensions: 6590
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)