BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB07FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1244 1566 0.0
>3x_Contig1244
Length = 4689
Score = 1566 bits (790), Expect = 0.0
Identities = 851/864 (98%), Gaps = 6/864 (0%)
Strand = Plus / Minus
Query: 85 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 caagactagtagcaaaactggtggtaaagctcgtaaagcccgtcataagaaaggtgccat 2135
Query: 145 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 gtctgacgtctctggattctcaatgagttcaagtgcacttgcacgtacagaagtgatgac 2075
Query: 205 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 tgtgttagatgataaatacgatcaaatcatcggaggatatgaaaactatgaagaagagtt 2015
Query: 265 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 agctgaagatgaagagaaacatgaaagctttgatatgctcaaagaacgtccagatctcga 1955
Query: 325 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 atctatgctcgacgatttcctggataattatgaacttggaagtggtaatagaaagctagt 1895
Query: 385 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 taagaaggatgaagagatcgccagactaaaagaagctgctgacgaagtcagcaaaggtaa 1835
Query: 445 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gctatcgatgagaagaaaaagggaaaaggagaagaaatccgtgaaagggattacaaatgg 1775
Query: 505 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 acttaacagtctcaagttttaaacagttcctcttttcatctgcttctcaatttgctttct 1715
Query: 565 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcacttaattataaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 tatgatacttttatacatagatcggtcaaattcaccatttatttcgcacttaattataaa 1655
Query: 625 gatctatagattcaattccaacataatataatcggaaccttcttgaacactccagtagtt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 gatctatagattcaattccaacataatataatcggaaccttcttgaacactccagtagtt 1595
Query: 685 gtttagtctagtgacatctaacctgccttttctttgtctcgatgtgttgcaatatcgata 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 gtttagtctagtgacatctaacctgccttttctttgtctcgatgtgttgcaatatcgata 1535
Query: 745 ttaaaatttagtactatttatgaaactatncaacattc-aaatgatggccatacccttca 803
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct: 1534 ttaaaatttagtactatttatgaaactatcaacaattcaaaatgatggccatacccttca 1475
Query: 804 aaaagagaattttaac-agggaagaggnaagctactgtgatagaggtatttctaatctcg 862
|||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 1474 aaaagagaatattaacaaggaaagaggaaagctactgtgatagaggtatttctaatctcg 1415
Query: 863 aattgcacactattgatt-accaccatgagtgacgaaatttcc-agttaagaaacc-agt 919
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct: 1414 aattgcacactattgattaaccaccatgagtgacgaaatttccaagttaagaaaccaagt 1355
Query: 920 tctaga-cttcagggtctcgttaa 942
|||||| |||||||||||||||||
Sbjct: 1354 tctagagcttcagggtctcgttaa 1331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7267
Number of Sequences: 1807
Number of extensions: 7267
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)