BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB09RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1645 0.0
>3x_Contig1791
Length = 39945
Score = 1645 bits (830), Expect = 0.0
Identities = 908/927 (97%), Gaps = 6/927 (0%)
Strand = Plus / Minus
Query: 45 cttcaagagtttaacgtatatattaagtctttcgttttgatatgagaccatttctattct 104
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20130 cttcaagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattct 20071
Query: 105 ttttattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20070 ttttattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtac 20011
Query: 165 cgtgtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacattntttgttc 224
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 20010 cgtgtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttc 19951
Query: 225 atggttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19950 atggttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaa 19891
Query: 285 tgtattacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19890 tgtattacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaat 19831
Query: 345 agagtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggct 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19830 agagtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggct 19771
Query: 405 ttgattcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggtt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19770 ttgattcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggtt 19711
Query: 465 gttacaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19710 gttacaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaatt 19651
Query: 525 tgaggtcttagttaattcatctagttcgatctttggatccagccaggacatgctatcaaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19650 tgaggtcttagttaattcatctagttcgatctttggatccagccaggacatgctatcaaa 19591
Query: 585 gaaaaataggaaggaagtagtcaatatcgcaaacttagtcttccaatgattctttaccac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19590 gaaaaataggaaggaagtagtcaatatcgcaaacttagtcttccaatgattctttaccac 19531
Query: 645 atttcctacaagagagaactttcttgtactgactttcatttctatttcccccatcttaag 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19530 atttcctacaagagagaactttcttgtactgactttcatttctatttcccccatcttaag 19471
Query: 705 tactttcaaataccccttttgaagatcagaatcttcatccaagatctcaaagtttatatc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19470 tactttcaaataccccttttgaagatcagaatcttcatccaagatctcaaagtttatatc 19411
Query: 765 tttgaatttggagagtaattgggtttttgnntaactttcagtaaccaccttttattttcc 824
||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||
Sbjct: 19410 tttgaatttggagagtaattggg-ttttgttaaacttcaagtaaccacctttta-tttcc 19353
Query: 825 ttcctt-aagataaaagc-tcttagctccgtatgtataaaattcagtactagtttttaga 882
|||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||
Sbjct: 19352 ttccttaaagataaaagcttcttagctccgtatgtatcaatttcagtactagtttttaga 19293
Query: 883 cactctgatggctc-aaatcgatgaagtttcgttaagtaatgctggtcaaagaatcattg 941
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 19292 cactctgatggctcaaaatcgatgaagtttcgtaaagtaatgctggtcaaagaatcattg 19233
Query: 942 ataggat-gtgataaggatcgatatct 967
||| ||| |||||||||||||||||||
Sbjct: 19232 ataagatagtgataaggatcgatatct 19206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8061
Number of Sequences: 1807
Number of extensions: 8061
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)