BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB10RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1277 1562 0.0
>3x_Contig1277
Length = 5748
Score = 1562 bits (788), Expect = 0.0
Identities = 880/901 (97%), Gaps = 9/901 (0%)
Strand = Plus / Plus
Query: 50 caaaattttgaaggagaacggtgccaaggatattcctgtcggggaacccattgcatacat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2463 caaaattttgaaggagaacggtgccaaggatattcctgtcggggaacccattgcatacat 2522
Query: 110 cgctgatgtggacgatgatttggccactttggagttcccaaagcccgttgaagccaagaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2523 cgctgatgtggacgatgatttggccactttggagttcccaaagcccgttgaagccaagaa 2582
Query: 170 agaatcaaagccagttgaaactaaaaaggaggaggccaaaccagtggaaaaaactgacaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2583 agaatcaaagccagttgaaactaaaaaggaggaggccaaaccagtggaaaaaactgacaa 2642
Query: 230 gaagaagcaaaccagtgcttcaaaaacaccttctaagaacggcagtgttcaggctaatgc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2643 gaagaagcaaaccagtgcttcaaaaacaccttctaagaacggcagtgttcaggctaatgc 2702
Query: 290 atctcaaacattattcccatctgtgctatcactactagaggaaaacaatatttcaactgc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 atctcaaacattattcccatctgtgctatcactactagaggaaaacaatatttcaactgc 2762
Query: 350 agatgcgttggacaaaatcaaggccactggtccaaacggtagaatcttaaaaggtgatgt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2763 agatgcgttggacaaaatcaaggccactggtccaaacggtagaatcttaaaaggtgatgt 2822
Query: 410 gctagcctatttgggtaagatttcccaagattcgttgaacaaggtaaccgagtacatcaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2823 gctagcctatttgggtaagatttcccaagattcgttgaacaaggtaaccgagtacatcaa 2882
Query: 470 atcccatgagaaattggatctaaccaacatcgaattaagacctgctagagaaactgcagc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2883 atcccatgagaaattggatctaaccaacatcgaattaagacctgctagagaaactgcagc 2942
Query: 530 agcagcagcagcagcacaagctgctaaacccgctaaaccattacctctagtactaagcga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2943 agcagcagcagcagcacaagctgctaaacccgctaaaccattacctctagtactaagcga 3002
Query: 590 acagatcacactccatgtcccagaaaacgtcacttactcccaactatctgctgcgatagc 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3003 acagatcacactccatgtcccagaaaacgtcacttactcccaactatctgctgcgatagc 3062
Query: 650 atcgtacgtcaaggaatgttcattcttggcacacgacgaaccattgaccaatgacgcatc 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3063 atcgtacgtcaaggaatgttcattcttggcacacgacgaaccattgaccaatgacgcatc 3122
Query: 710 cgaactatacgacccattattcgaagagttactagtacaagaaccaacanaacctcgttt 769
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3123 cgaactatacgacccattattcgaagagttactagtacaagaaccaacaaaacctcgttt 3182
Query: 770 caaggtcactttatacatagtagacttggaaccctaca-caanacaccgtacctcttcac 828
||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||
Sbjct: 3183 caaggtcacttataacatagtagacttggaa-cctacaccaagacaccgtacctcttcac 3241
Query: 829 cacaaccagatatctttgatttattatctgggtac-accacgcagaaactactac-aga- 885
||||||||||||||||||||||||||||| ||||| || ||||| |||||| || |||
Sbjct: 3242 cacaaccagatatctttgatttattatct-ggtacaacaacgcaagaactacaacaagag 3300
Query: 886 gcattcgcagtatccaaac-aca--caacacgtcacgaatacgcgttgaacgttttcgtc 942
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 3301 gcatccgcagtatccaaacaacaacaaacacgtcacgaatacgcgttgaacgtttccgtc 3360
Query: 943 g 943
|
Sbjct: 3361 g 3361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6762
Number of Sequences: 1807
Number of extensions: 6762
Number of successful extensions: 314
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)