BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB11FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig800 753 0.0
>3x_Contig800
Length = 3612
Score = 753 bits (380), Expect = 0.0
Identities = 474/493 (96%), Gaps = 10/493 (2%)
Strand = Plus / Plus
Query: 445 tgagagtgaaaaagacaaccaggttgctcaaatactctaacgagaagctaactccagagg 504
|||||||||||| ||||||||| |||||||||||| |||||||||| || |||||| ||
Sbjct: 1 tgagagtgaaaa-gacaaccag-ttgctcaaatac-ctaacgagaatcttactccaaag- 56
Query: 505 actattctgtgtttgtgaaccagttaatggatgtgtacagcaaagatattgaactattga 564
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 actattctttgtt-gtgaaccagttaatggatgtgtacagcaaagatattgaactattga 115
Query: 565 ataaaactgaagtatggaagtctctttaccatatttatcgagtttttgttgtcaatgccg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ataaaactgaagtatggaagtctctttaccatatttatcgagtttttgttgtcaatgccg 175
Query: 625 ttgatgatggtaatgccatggtcctgtacgatttgaatcaatttgttagaatgtttataa 684
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 176 ttgatgatggtaatgccatggtcctgtacgatgtgaatcaatttgttagaatgtttataa 235
Query: 685 acttaaacgatttaccgttagctagaaacgttttccaattgattttgaagaatt-aaaga 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 236 acttaaacgatttaccgttagctagaaacgttttccaattgattttgaagaattcaaaga 295
Query: 744 atggagagataccaaaagatgttcagactatatgcatgtacctaaagttatattgtggtg 803
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 296 atggagagataccaaaagatgttcagactatatgcatgtacctaaggttatattgtggtg 355
Query: 804 cactaagcgaa-tatggacgacacanactttctc-gaacttttatcaagatcttatcgna 861
||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct: 356 cactaagcgaattatggacgacacaaac-ttctcggaacttttatcaagatcttatcgga 414
Query: 862 tcattatctgnatctaacgcaagtagcattcgtatcccatcgcacatagcatacccaacg 921
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tcattatctggatctaacgcaagtagcattcgtatcccatcgcacatagcatacccaacg 474
Query: 922 aatcggagtaccg 934
||||||||||||
Sbjct: 475 -atcggagtaccg 486
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6814
Number of Sequences: 1807
Number of extensions: 6814
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)