BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1508 1562 0.0
>3x_Contig1508
Length = 7899
Score = 1562 bits (788), Expect = 0.0
Identities = 872/893 (97%), Gaps = 7/893 (0%)
Strand = Plus / Minus
Query: 46 gcttgtagcaaccagtcgttgatcttgtcctcgaaaatgcataagaatctattgacagtg 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gcttgtagcaaccagtcgttgaacttgtcctcgaaaatgcataagaatctattgacagtg 945
Query: 106 gttctttcgacggacaggttatgagtatgtagcaataggtaaagggatccaaattggatc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 gttctttcgacggacaggttatgagtatgtagcaataggtaaagggatccaaattggatc 885
Query: 166 aaacaatcttgaaatccagccacggagttgtatggttttccactaagttctttttttaga 225
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 884 aaacaatcttgaaatccagccacggagttgtatggttttccactaagttcggtgaagaga 825
Query: 226 gaccaatatactcgagaattggcagagagatacccgtagttgaaacacaaagcgtaccag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gaccaatatactcgagaattggcagagagatacccgtagttgaaacacaaagcgtaccag 765
Query: 286 tatttacccaattctgtaagaattgaaatgcgttttggatccatagtcaaggaagtgacc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tatttacccaattctgtaagaattgaaatgcgttttggatccatagtcaaggaagtgacc 705
Query: 346 atcgtttggaaactctgtggagccaacattctgttaaaaatttgatgatgtttctggtcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atcgtttggaaactctgtggagccaacattctgttaaaaatttgatgatgtttctggtcc 645
Query: 406 gagtcatctagatctgaaccctggccatcatgagccaaagttggtttacaatgtgccaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gagtcatctagatctgaaccctggccatcatgagccaaagttggtttacaatgtgccaat 585
Query: 466 aagaacattattctccatctgggtaaatcgaaaggattttcaaagaggctggtctcgaca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aagaacattattctccatctgggtaaatcgaaaggattttcaaagaggctggtctcgaca 525
Query: 526 cattttataagagttgcgttaagatttgcatcagttcgtatagaacacgaatgtagcaaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cattttataagagttgcgttaagatttgcatcagttcgtatagaacacgaatgtagcaaa 465
Query: 586 atattagccacaataatggct-aacgtttcactttgagaagaatccggctgcacatggta 644
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atattagccacaataatggctaaacgtttcactttgagaagaatccggctgcacatggta 405
Query: 645 gaaccagtgcagaatcttttggaaactagagtgatagaccgaactatctaccctagacaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaaccagtgcagaatcttttggaaactagagtgatagaccgaactatctaccctagacaa 345
Query: 705 ctgaagcaaccgttggcattggtctgctgtaagttccaaaccagaacatgtattcacata 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgaagcaaccgttggcattggtctgctgtaagttccaaaccagaacatgtattcacata 285
Query: 765 tgagttcatcgtttgaagcacgttagtcgagttaatttcaagaatactaccactaacagt 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgagttcatcgtttgaagcacgttagtcgagttaatttcaagaatactaccactaacagt 225
Query: 825 cgccaccaaaccc-acctgaatt-actatcaaccttana--cccaccttatatatatact 880
||||||||||||| ||||||||| ||||||||||||| | || || |||||||||||||
Sbjct: 224 cgccaccaaacccaacctgaattaactatcaaccttaaaacccaacgttatatatatact 165
Query: 881 t-aatacatgcgtncacataatatcaa-tggctcttatatcgggcgttgacta 931
| ||||||||||| ||||||||||||| || |||||||||||| || ||||||
Sbjct: 164 taaatacatgcgtccacataatatcaattgcctcttatatcggccggtgacta 112
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6515
Number of Sequences: 1807
Number of extensions: 6515
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)