BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB12FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1669 0.0
>3x_Contig1451
Length = 8346
Score = 1669 bits (842), Expect = 0.0
Identities = 876/884 (99%), Gaps = 3/884 (0%)
Strand = Plus / Minus
Query: 91 gtcaccggatttggttcagttattatttttcattggatatggaaacttcggagttgagtg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6559 gtcaccggatttggttcagttattatttttcattggatatggaaacttcggagttgagtg 6500
Query: 151 gtccgttcccgtctcggatgattgtggtccgatggacaagctgattcgaaggccctttcg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6499 gtccgttcccgtctcggatgattgtggtccgatggacaagctgattcgaaggccctttcg 6440
Query: 211 ttctctttacggcaggttagcaaggccgtaagctcatcgcttgggtatgtccacgagcta 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6439 ttctctttacggcaggttagcaaggccgtaagctcatcgcttgggtatgtccacgagcta 6380
Query: 271 cactctctgtacggatagtttcttagcaccgtcaacaagattaaggaactgaatggtgta 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6379 cactctctgtacggatagtttcttagcaccgtcaacaagattaaggaactgaatggtgta 6320
Query: 331 ttgtttcattatggtacaggattgcaccggagcactgtatttgtggagctacttgtgcta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6319 ttgtttcattatggtacaggattgcaccggagcactgtatttgtggagctacttgtgcta 6260
Query: 391 acagcacgagagtgcccaatttatttcatcaagtaagtttagctgcgaatatataaagta 450
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6259 acagcacgagagt-cccaatttatttcatcaagtaagtttagctgcgaatatataaagta 6201
Query: 451 aagctgtagatggaggatagacttgtcattcgagaattggtttgaattggattcagttgc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 aagctgtagatggaggatagacttgtcattcgagaattggtttgaattggattcagttgc 6141
Query: 511 gaataattcttttaacatacagatatagaaaaccaatcatcaacattgattgatacgagc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 gaataattcttttaacatacagatatagaaaaccaatcatcaacattgattgatacgagc 6081
Query: 571 aaaacagaataacaactaacatcagcgttttcaaacggttaatataatgtcttttgactt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 aaaacagaataacaactaacatcagcgttttcaaacggttaatataatgtcttttgactt 6021
Query: 631 aacagatcactcacatgcacgttacaatccattgactgattcttggattttggtatctcc 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 aacagatcactcacatgcacgttacaatccattgactgattcttggattttggtatctcc 5961
Query: 691 acatagagccaagagaccatggttaggtcaacaggagaaacctggtagaaacgatgctcc 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5960 acatagagccaagagaccatggttaggtcaacaggagaaacctggtagaaacgatgctcc 5901
Query: 751 agaccacgacgataaatgctacttatgtcccggtactaccagngctacaggtgagcanga 810
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 5900 agaccacgacgataaatgctacttatgtcccggtactaccagggctacaggtgagcagaa 5841
Query: 811 cccagattacgaatctacatatgtcttcactaacggctatccagctgtgaaattagaaac 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5840 cccagattacgaatctacatatgtcttcactaacggctatccagctgtgaaattagaaca 5781
Query: 871 accagatccagaactgacggtgtcgaattgcgacgcattgaaggagagattgttcaagtt 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5780 accagatccagaactgacggtgtcgaattgcgacgcattgaaggagagattgttcaagtt 5721
Query: 931 gaaa-gtgtgaaaggt-actgttatgtgatctgcttctctccaa 972
|||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 5720 gaaaggtgtgaaaggtaactgttatgtgatctgcttctctccaa 5677
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5752
Number of Sequences: 1807
Number of extensions: 5752
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)