BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZB12RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1778 0.0
>3x_Contig1640
Length = 15521
Score = 1778 bits (897), Expect = 0.0
Identities = 927/936 (99%), Gaps = 1/936 (0%)
Strand = Plus / Plus
Query: 41 gcttcttagagagacgaaagtagttgtcgtagtcaaccaatttaagaaatcttccaatcc 100
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 462 gcttcttagagagacgaaagtaggggtcgtagtcaaccaatttaagaaatcttccaatcc 521
Query: 101 agacatcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtga 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agacatcgtcaaattggtgaagaagatgattttatcctggaaagatgctgtggctcgtga 581
Query: 161 aaagaatttcaaactaagcagcaattcctcatctacaagtaacaataatggt-caatcgg 219
|||||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct: 582 aaagaaaagcaaactaagcagcaattcctcatctacaagtaccaataatggtacaagcgg 641
Query: 220 tggagaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacga 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tggagaagcagtaaagaaggagaaatatgtcagcaaagctccaagaaatgctaagaacga 701
Query: 280 cggtgtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattata 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cggtgtgaaaacggatatatatggtgtcaagattagagatatggctattagggcattata 761
Query: 340 tgatgcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgatgcattggcaaaagaaagtgaacatcctccagtagctatcctagatacagtaatgag 821
Query: 400 tattgagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tattgagacagaaatggctaatctgttcaatcccgagtctgacgaaaagggatatcgtga 881
Query: 460 caaatacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatag 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 caaatacagaataatttactcaaatataatctccaagaacaatccagatttgaaacatag 941
Query: 520 aattacgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 aattacgaatggagaagtatcagccaaacatttagtgactgctgatcctaaggacttggc 1001
Query: 580 accggaacatttaaagaagaaaattgaggaaattgagaaacagaatttgtttaatgcaca 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 accggaacatttaaagaagaaaattgaggaaattgagaaacagaatttgtttaatgcaca 1061
Query: 640 aggtgcaactgtagaaagatcagtaacagatagattccaatgtggcaaatgtaaacaaag 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 aggtgcaactgtagaaagatcagtaacagatagattccaatgtggcaaatgtaaacaaag 1121
Query: 700 aaaagtatcatactaccaactacaaacaagatctgcggatgaacctcttactactttttg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 aaaagtatcatactaccaactacaaacaagatctgcggatgaacctcttactactttttg 1181
Query: 760 tacatgtgagaattgcggtaatagatggaagttctcgtagttgaaattctcactttgaat 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 tacatgtgagaattgcggtaatagatggaagttctcgtagttgaaattctcactttgaat 1241
Query: 820 tttacgaagatagccttggcatatgatacactaaagcagcatgatgatggcagtgatcaa 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 tttacgaagatagccttggcatatgatacactaaagcagcatgatgatggcagtgatcaa 1301
Query: 880 gcactaaaactctttcgttatttcattgctagctagatgtgtacacatagcatncgccaa 939
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1302 gcactaaaactctttcgttatttcattgctagctagatgtgtacacatagcatccgccaa 1361
Query: 940 ttctacatcatacattcttccggctaactagtattt 975
||||||||||||||||||||||||||||||||||||
Sbjct: 1362 ttctacatcatacattcttccggctaactagtattt 1397
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8197
Number of Sequences: 1807
Number of extensions: 8197
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)