BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC22ZC01FM1.SCF screened BAC_end (972 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1763 591 e-168 >3x_Contig1763 Length = 22654 Score = 591 bits (298), Expect = e-168 Identities = 343/353 (97%), Gaps = 4/353 (1%) Strand = Plus / Plus Query: 108 gaaacaagaaatggaacgtgctgaaagagattatgagattttcctacaagaattggagga 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gaaacaagaaatggaacgtgctgaaagagattatgagattttcctacaagaattggagga 60 Query: 168 agatgaggaaatgagacaaacaatcaatctatataagagcaacaaacctgctgagcacga 227 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 61 agatgaggaaatgagacaaacaatcaatctatataagagcaacaaaccagcagagcacga 120 Query: 228 aggcgagatggaagaagatgaagatgaagatgctccacaaattgatattgatgaactatt 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aggcgagatggaagaagatgaagatgaagatgctccacaaattgatattgatgaactatt 180 Query: 288 agatgagttggatgagatgactttagaagatcaacaancaggtgaagaaatgctatagaa 347 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 181 agatgagttggatgagatgactttagaagatcaacaacaaggtgaagaaatgctatagaa 240 Query: 348 tttggtttagtctcttcttgtttggacaataa-tacaatatatatttacgagataggcaa 406 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 241 tttggtttagtctcttcttgtttggacaataattacaatatatatttacgagataggcaa 300 Query: 407 ggtagttgaaattaactcatcatcttgcatttagatcaatgatacaatggccg 459 | |||||| |||| |||||||||| |||| ||||||||||||||||||||||| Sbjct: 301 gttagttg-aatttactcatcatc-tgca-ttagatcaatgatacaatggccg 350 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,848 Number of Sequences: 1807 Number of extensions: 20848 Number of successful extensions: 2651 Number of sequences better than 1.0e-20: 1 length of query: 972 length of database: 10,358,551 effective HSP length: 16 effective length of query: 956 effective length of database: 10,329,639 effective search space: 9875134884 effective search space used: 9875134884 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)