BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC01RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1360 1457 0.0
>3x_Contig1360
Length = 8285
Score = 1457 bits (735), Expect = 0.0
Identities = 873/902 (96%), Gaps = 13/902 (1%)
Strand = Plus / Minus
Query: 44 gctttatctctttcgataaaaacttcattgcccaaaatgagaggagatttacggagaatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7782 gctttatctctttcgataaaaacttcattgcccaaaatgagaggagatttagggagaatg 7723
Query: 104 gacctcaaagagttgggagaggcaacactgtagtttcttgttatactaattctgccactt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7722 gacctcaaagagttgggagaggcaacactgtagtttcttgttatactaattctgccactt 7663
Query: 164 gtgggtcttctaatttgggcgttgttttgacattgggtatcaatttcagactttctttct 223
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 7662 gtgggtcttctaatttgggcgttgttttgacattgggtatcaatttcagacgtactttct 7603
Query: 224 tcatatgcagttattaacgatgcaatatcttcattttcgttttcatactcatcttggata 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7602 tcatatgcagttattaacgatgcaatatcttcattttcgttttcatactcatcttggata 7543
Query: 284 gcattatcatttgcatcactttccattgaagttgcactcgtctccgttgcttctctattt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7542 gcattatcatttgcatcactttccattgaagttgcactcgtctccgttgcttctctattt 7483
Query: 344 tgtggtgaacaggatctgtcatctgtcgaatcagatttctcgaaattgaacctacgaagg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7482 tgtggtgaacaggatctgtcatctgtcgaatcagatttctcgaaattgaacctacgaagg 7423
Query: 404 tcattaacattcagctttcttttcaaagttggggcagattccatgaaaatattactactc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7422 tcattaacattcagctttcttttcaaagttggggcagattccatgaaaatattactactc 7363
Query: 464 cctttatgttgactcaagatattcccagaagatgaaatatctgaaaatgcagagtcataa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7362 cctttatgttgactcaagatattcccagaagatgaaatatctgaaaatgcagagtcataa 7303
Query: 524 gtgacaatagaagtaatagagtctctttcaccgttatattctcctatgttgttcaggtta 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7302 gtgacaatagaagtaatagagtctctttcaccgttatattctcctatgttgttcaggtta 7243
Query: 584 tttgcaagtatggccttctttgtaggagagtttcttgtcggatcatggaaaaccaatctt 643
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7242 tttgcaagtatggccttctttgtaggagagttccttgtcggatcatggaaaaccaatctt 7183
Query: 644 tttggactgctgttgtcattggtattaggtagtcccattaaggcattcgtgatgctgtat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7182 tttggactgctgttgtcattggtattaggtagtcccattaaggcattcgtgatgctgtat 7123
Query: 704 ctagaattattgtnagagtacagcatttggtgcagagttttcttatattttttcctcttc 763
||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||| ||
Sbjct: 7122 ctagaattattgtaagagtacagca-ttggtgcagag-tttcttata-tttttcctc-tc 7067
Query: 764 aggggccgaggttgaaaggagataacagaggggtagtttgacttgtttggttctgacatt 823
| |||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||
Sbjct: 7066 aagggccgaggttg-aaggagataacagatgggtag-ttgacttgttt-gttctgacatt 7010
Query: 824 ccaaagttttagatagcggatattcctgagttagcgattgatgaaacagttttttaaaag 883
|||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||
Sbjct: 7009 -caaagttttagatagc-gatatcactgagttagcgattgatgaaacagttttgt-aaag 6953
Query: 884 gttaaga-tattaaataccctattattcctgggattcatcctcatttgttttccaactta 942
||||||| ||| || || ||| || ||||| |||||||||||||||| |||||||||||
Sbjct: 6952 gttaagattatcaataacacta-taatcctgcgattcatcctcatttg-tttccaactta 6895
Query: 943 ga 944
||
Sbjct: 6894 ga 6893
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8241
Number of Sequences: 1807
Number of extensions: 8241
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)