BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC02RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1722 1637 0.0
>3x_Contig1722
Length = 17718
Score = 1637 bits (826), Expect = 0.0
Identities = 858/866 (99%), Gaps = 2/866 (0%)
Strand = Plus / Plus
Query: 45 tatcttggagtt-aactgacttgtttcaaccattaatggtgtgcttcttcgataatagtc 103
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatcttggagttcaactgacttgtttcaaccattaatggtgtgcttcttcgataatagtc 477
Query: 104 atagttgtttaaattcaaggtcataacgaatataccactgtaggagctattgtcatttct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atagttgtttaaattcaaggtcataacgaatataccactgtaggagctattgtcatttct 537
Query: 164 atccttttaaaagaatatcgttaatataagagaaagaagataataattagtataaatggt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atccttttaaaagaatatcgttaatataagagaaagaagataataattagtataaatggt 597
Query: 224 cgctccaactgctttgaagaaaagtgacgtttctgagggcactgtgcctgttacaacaac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cgctccaactgctttgaagaaaagtgacgtttctgagggcactgtgcctgttacaacaac 657
Query: 284 ttctcgtattgttggtgttgataacactgaaaagatcgatgaagacgatgatgatgctga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttctcgtattgttggtgttgataacactgaaaagatcgatgaagacgatgatgatgctga 717
Query: 344 tgtactaatagatcaggacggtgatgctatgcttgttgatgaggaaaataacgaggaatc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tgtactaatagatcaggacggtgatgctatgcttgttgatgaggaaaataacgaggaatc 777
Query: 404 taacaagaagaaagaagacgcaggtgtagtgctagatgccgaagggaaaccaagattcac 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 taacaagaagaaagaagacgcaggtgtagtgctagatgccgaagggaaaccaagattcac 837
Query: 464 tagtgctgctagctctgctcaaaccaaagtgaaactagaaagcagaaaagtttctgtccc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tagtgctgctagctctgctcaaaccaaagtgaaactagaaagcagaaaagtttctgtccc 897
Query: 524 accacatagaatgacgcctcttaaaaacaactggtccaagatttacccaccattagtcga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 accacatagaatgacgcctcttaaaaacaactggtccaagatttacccaccattagtcga 957
Query: 584 ccatttaaaactacaagttagaatgaacttaaagaccaagtctgtcgaattaagaaccca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ccatttaaaactacaagttagaatgaacttaaagaccaagtctgtcgaattaagaaccca 1017
Query: 644 tccaaagcataccacagatccaggtgctctacagaaaggtgcagatttcatcaaagcatt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tccaaagcataccacagatccaggtgctctacagaaaggtgcagatttcatcaaagcatt 1077
Query: 704 tactctcggtttcgatttggatgactccattgctttgttgagattagacgatttatatat 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 tactctcggtttcgatttggatgactccattgctttgttgagattagacgatttatatat 1137
Query: 764 cgaaacatttgaaatcaaagacgttaagactttgcaaggtgaccatctatcaagaagcat 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1138 cgaaacatttgaaatcaaagacgttaagactttgcaaggtgaccatctatcaagagcaat 1197
Query: 824 tggtcgtattgctgggtaagatgggaagaccaag-ttgctattgagaatgccaccagaac 882
||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 1198 tggtcgtattgctggtaaagatggaaagaccaagtttgctattgagaatgccaccagaac 1257
Query: 883 gagaattgtcttggccgactctaaga 908
||||||||||||||||||||||||||
Sbjct: 1258 gagaattgtcttggccgactctaaga 1283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7688
Number of Sequences: 1807
Number of extensions: 7688
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)