BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC03FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1641 0.0
3x_Contig1243 196 6e-50
>3x_Contig1782
Length = 24703
Score = 1641 bits (828), Expect = 0.0
Identities = 864/873 (98%), Gaps = 4/873 (0%)
Strand = Plus / Minus
Query: 89 cagagcgatgagcgaggaagcgcgaggaccgaaattacccagtggaaacaccgttcactg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382 cagagcgatgagcgaggaagcgcgaggaccgaaattacccagtggaaacaccgttcactg 12323
Query: 149 ttgtagatagtttcttgaaactagttttgtcacttgtttgtcaccggttctcgaagagtt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12322 ttgtagatagtttcttgaaactagttttgtcacttgtttgtcaccggttctcgaagagtt 12263
Query: 209 aatattgacaaaagatggctgaatgcagaaagcgggatattcaggacaaagagagtgaga 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12262 aatattgacaaaagatggctgaatgcagaaagcgggatattcaggacaaagagagtgaga 12203
Query: 269 gagagacccgagtgaaaattcgagcgaaacgtgatgtaaacgtgacgaggacagcaagtt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12202 gagagacccgagtgaaaattcgagcgaaacgtgatgtaaacgtgacgaggacagcaagtt 12143
Query: 329 tacgacatcaggtgttgtcaagagggaacatgtggattatagtggtaaagcatggtcaag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12142 tacgacatcaggtgttgtcaagagggaacatgtggattatagtggtaaagcatggtcaag 12083
Query: 389 gacacggcttgtaaaaaggtctgcattactgtcaccacatacgaaacgtgaaagggcttt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12082 gacacggcttgtaaaaaggtctgcattactgtcaccacatacgaaacgtgaaagggcttt 12023
Query: 449 cacggttgccaaaaaaaatggcgtcacagacaggattcgaacctgcgaagacaaagtcca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12022 cacggttgccaaaaaaaatggcgtcacagacaggattcgaacctgcgaagacaaagtcca 11963
Query: 509 atgcctctctatctaagaatagcagggcatcgccttaaccactcggccactgtgacatga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11962 atgcctctctatctaagaatagcagggcatcgccttaaccactcggccactgtgacatga 11903
Query: 569 gttcagagagagcagatatggaatagccccaagtctgggatcacagtgtccgtgaattgc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11902 gttcagagagagcagatatggaatagccccaagtctgggatcacagtgtccgtgaattgc 11843
Query: 629 ctgaaacgtatcactttcgtataggacttcttcccactggtgccggatggttcccgaacc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11842 ctgaaacgtatcactttcgtataggacttcttcccactggtgccggatggttcccgaacc 11783
Query: 689 ccattgaccaacacctccaacaataaacagaccattccagatactacacgacttgacata 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11782 ccattgaccaacacctccaacaataaacagaccattccagatactacacgacttgacata 11723
Query: 749 ctaataatagttacagtggtatgacaaggtcataccactgccataggcaccagtaacaaa 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11722 ctaataatagttacagtggtatgacaaggtcataccactgccataggcaccagtaacaaa 11663
Query: 809 agactccaaccggtgacgtcacgtgacacagcataagcctcttcctgntgccccccccgg 868
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 11662 agactccaaccggtgacgtcacgtgacacagcataagcctctccctgttgccccccccgg 11603
Query: 869 at-accggggcgacaccccaa-gggacccccttgtaaacgacaaaa--gcactgnttcac 924
|| |||||||||||||||||| |||||||||||||||||||||||| |||||| |||||
Sbjct: 11602 ataaccggggcgacaccccaaggggacccccttgtaaacgacaaaaaggcactgtttcac 11543
Query: 925 tacggcaatgtctgtgcaaatatttctcaattt 957
|||||||||||||||||||| |||||||||||
Sbjct: 11542 tacggcaatgtctgtgcaaaattttctcaattt 11510
>3x_Contig1243
Length = 5571
Score = 196 bits (99), Expect = 6e-50
Identities = 102/103 (99%)
Strand = Plus / Minus
Query: 459 aaaaaaaatggcgtcacagacaggattcgaacctgcgaagacaaagtccaatgcctctct 518
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2668 aaaaaaattggcgtcacagacaggattcgaacctgcgaagacaaagtccaatgcctctct 2609
Query: 519 atctaagaatagcagggcatcgccttaaccactcggccactgt 561
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 atctaagaatagcagggcatcgccttaaccactcggccactgt 2566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4462
Number of Sequences: 1807
Number of extensions: 4462
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)