BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC03RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1647 0.0
>3x_Contig1782
Length = 24703
Score = 1647 bits (831), Expect = 0.0
Identities = 887/903 (98%), Gaps = 3/903 (0%)
Strand = Plus / Plus
Query: 49 taggcatgtaaaactgccattgggcaaagggtacaggggaaaagagcctgtgttccacta 108
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttccacta 663
Query: 109 ctttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatgccga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatgccga 723
Query: 169 gcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgatgaac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgatgaac 783
Query: 229 aatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaactct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaactct 843
Query: 289 cgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtccacagt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtccacagt 903
Query: 349 tgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatcatttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatcatttg 963
Query: 409 atggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaaaaag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 atggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaaaaag 1023
Query: 469 tgtatctgagccaaatctcagacgttttcatatatatggattctgtgtactctaaacgag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tgtatctgagccaaatctcagacgttttcatatatatggattctgtgtactctaaacgag 1083
Query: 529 aaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgtagaac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgtagaac 1143
Query: 589 acgtttccggtacgcttaagagttctttggttgatgagataaaccaggcaagagagagtg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 acgtttccggtacgcttaagagttctttggttgatgagataaaccaggcaagagagagtg 1203
Query: 649 cagcacagtactcaggatttgatatactcaagaacgctattgcagttcttaatagtttgg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 cagcacagtactcaggatttgatatactcaagaacgctattgcagttcttaatagtttgg 1263
Query: 709 agctgaaagagggtatgagcagcgttttcctgatggaatttgaaccatttcttcttgata 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 agctgaaagagggtatgagcagcgttttcctgatggaatttgaaccatttcttcttgata 1323
Query: 769 gcacagaggcatactatanaaatctacatagtcaattgattgctngagc-agacgagact 827
|||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 1324 gcacagaggcatactataaaaatctacatagtcaattgattgct-gagcaagacgagact 1382
Query: 828 aggtggaaggacttttacacgttacttgagctattgnatactgagaaacanatctgctgc 887
||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||
Sbjct: 1383 aggtggaaggactttaacacgttacttgagctattgaatactgagaacaagatctgctgc 1442
Query: 888 aatatatttgaagatcaanatactattttttaagttacacatatttgccgaacgggtctt 947
|||||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||
Sbjct: 1443 aatatatttgaagatcaagatacta-ttttaaagttacacaatattgccgaacgggtctt 1501
Query: 948 ggt 950
|||
Sbjct: 1502 ggt 1504
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6002
Number of Sequences: 1807
Number of extensions: 6002
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)