BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC06FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig872 1612 0.0
>3x_Contig872
Length = 3350
Score = 1612 bits (813), Expect = 0.0
Identities = 846/853 (99%), Gaps = 3/853 (0%)
Strand = Plus / Plus
Query: 87 tattgagtaaatctagcaatgcttcaagatcagattttttcttctcttcataatcgacag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 tattgagtaaatctagcaatgcttcaagatcagattttttcttctcttcataatcgacag 2356
Query: 147 ttgcagtgtcgccatagtaaggaggtgctttgttcgttagatgatcatttaacgatgatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 ttgcagtgtcgccatagtaaggaggtgctttgttcgttagatgatcatttaacgatgatt 2416
Query: 207 gaagattagaaacgagggaatttctcctggatgaagatgcactagtattttcgcttgttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 gaagattagaaacgagggaatttctcctggatgaagatgcactagtattttcgcttgttt 2476
Query: 267 gtccactgccgatctcccaagttgttgccaaaggatttgagcttgatcgtattatattaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 gtccactgccgatctcccaagttgttgccaaaggatttgagcttgatcgtattatattaa 2536
Query: 327 cagatgtcggaaggcctttttgttgttggttatcgagctgatttgacgatgctgaatttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2537 cagatgtcggaaggcctttttgttgttggttatcgagctgatttgacgatgctgaatttt 2596
Query: 387 tggagttcaaactaaccaaagtttttacaggagacaagtcttgattcttgttggtgaaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2597 tggagttcaaactaaccaaagtttttacaggagacaagtcttgattcttgttggtgaaaa 2656
Query: 447 aggccgataatgcagctgatgaagcatttcgcagtactttgggtggtaccggtgtctgta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2657 aggccgataatgcagctgatgaagcatttcgcagtactttgggtggtaccggtgtctgta 2716
Query: 507 gttgagatttctgaggaattagtttcttagcttcgtcgatattaacaaaagtatgaggct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2717 gttgagatttctgaggaattagtttcttagcttcgtcgatattaacaaaagtatgaggct 2776
Query: 567 catcagaatcgctcaaaagtgaaggattattgatcataatttcaatggaccgtttcaata 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2777 catcagaatcgctcaaaagtgaaggattattgatcataatttcaatggaccgtttcaata 2836
Query: 627 tcgttagccgtaccgacaacgagtaaggtgataatgggttgtacgaatatgcatgtgttg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2837 tcgttagccgtaccgacaacgagtaaggtgataatgggttgtacgaatatgcatgtgttg 2896
Query: 687 aagaatttgggaacctcaggagttctctaatatcagaatctgtgaaaatagaaccgttag 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2897 aagaatttgggaacctcaggagttctctaatatcagaatctgtgaaaatagaaccgttag 2956
Query: 747 acgatgacgatatggaagatatagttgatatcgtcgatgatttccctcattggttaattg 806
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2957 acgatgacgatatggaagatatagttgatatcgtcgatgatttcctcaattggttaattg 3016
Query: 807 gttctggctgttcaat-atgtcactggtagtcggaagcctcg-aaatgatgctaaactct 864
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3017 gttctggctgttcaataatgtcactggtagtcggaagcctcgaaaatgatgctaaactct 3076
Query: 865 gtgtatcatcatctgcagaagat-actctgccgttgaagtgccaatggcggcacgtttaa 923
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 3077 gtgtatcatcatctgcagaagataactctgccgttgaagtgccagtggcggcacgtttaa 3136
Query: 924 aacttgaagtgga 936
|||||||||||||
Sbjct: 3137 aacttgaagtgga 3149
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6985
Number of Sequences: 1807
Number of extensions: 6985
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)