BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC08FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1247 1503 0.0
>3x_Contig1247
Length = 7218
Score = 1503 bits (758), Expect = 0.0
Identities = 847/871 (97%), Gaps = 7/871 (0%)
Strand = Plus / Minus
Query: 95 cgaagctcagtatctgtaacagaacgcttggctgttttcatagcttcagtgaagtgttct 154
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7218 cgaaggtcagtatctgtaacagaacgcttggctgttttcatagcttcagtgaagtgttct 7159
Query: 155 ttggtaa-tgaatggaactggatcctcttgttgaacgtctgacatttcaa-cgtcttctt 212
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7158 ttggtaaatgaatggaactggatcctcttgttgaacgtctgacatttcaaacgtcttctt 7099
Query: 213 ctgtcttgaccttctcggtttcttctgcaccttcttctttcttgacaacttctgcacgtt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7098 ctgtcttgaccttctcggtttcttctgcaccttcttctttcttgacaacttctgcacgtt 7039
Query: 273 tttgtgcctcgatggaatctttaatggcaaacttcgcagctctctgtacgatatataata 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7038 tttgtgcctcgatggaatctttaatggcaaacttcgcagctctctgtacgatatataata 6979
Query: 333 aatctgcaccagagaatccctgtgtagcttgagcgatggtctttagatctagtcctggtt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6978 aatctgcaccagagaatccctgtgtagcttgagcgatggtctttagatctagtcctggtt 6919
Query: 393 ctaatggtgtatttcttaattgggctgatagaatagataatcttcctgtttcgtctggta 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6918 ctaatggtgtatttcttaattgggctgatagaatagataatcttcctgtttcgtctggta 6859
Query: 453 atggaacgtagatcaattgatccaatctaccaggtcttaaaatagctggatcgatttgat 512
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6858 atggaacgtagatcaattgatccaatctaccaggtctgaaaatagctggatcgatttgat 6799
Query: 513 ctggtctgttagtggcaccaataacgaaaacgttcttcttggcgttcataccatccattt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6798 ctggtctgttagtggcaccaataacgaaaacgttcttcttggcgttcataccatccattt 6739
Query: 573 cggtcaataattggttaaccactctgtcagatgcaccacctgcatcacctaaagaaccac 632
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6738 cggtcaataactggttaaccactctgtcagatgcaccacctgcatcacctaaagaaccac 6679
Query: 633 cacgagccttagcaatggagtccaattcatctaagaaaacgacagttggggctgcagctc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6678 cacgagccttagcaatggagtccaattcatctaagaaaacgacagttggggctgcagctc 6619
Query: 693 tggctttgtcganaa-atcacggatattggattcggactcaccgtaccacatacttaaat 751
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6618 tggctttgtcgaaaatatcacggatattggattcggactcaccgtaccacatacttaata 6559
Query: 752 actcangacccttgaccgaaatgaaattagcagacacttcggtggcgacagccttagcta 811
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6558 actcaggacccttgaccgaaatgaaattagcagacacttcggtggcgacagccttagcta 6499
Query: 812 acaaagtcttaccagtaccaggaggaccgtagaaacacacacccttcgatggtgacanac 871
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 6498 acaaagtcttaccagtaccaggaggaccgtagaacaacacacccttcgatggtgacaaac 6439
Query: 872 caaactnntggtgtattgatctggnatgc-anactgnatattcgacggnttcctttcaat 930
|||||| |||||||||||||||| |||| | |||| ||||||||||| |||||| | |
Sbjct: 6438 caaact--tggtgtattgatctgg-atgcaagactggatattcgacggtttccttcaatt 6382
Query: 931 catccttaatttcattcaagccaccgatatc 961
||||||||||||||| |||||||||||||||
Sbjct: 6381 catccttaatttcatccaagccaccgatatc 6351
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5926
Number of Sequences: 1807
Number of extensions: 5926
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)