BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC08RM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1621 753 0.0
3x_Contig145 430 e-120
>3x_Contig1621
Length = 10398
Score = 753 bits (380), Expect = 0.0
Identities = 402/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Plus
Query: 46 gctttagaaatcgtttcaattggagattttccatcacccttttctccgttagcatagtac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9990 gctttagaaatcgtttcaattggagattttccatcacccttttctccgttagcatagtac 10049
Query: 106 ttttctgcagcaaacactgcatctgtaccaatagaaaccttatcagcaccagatctgaaa 165
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10050 ttttttgcagcaaacactgcatctgtaccaatagaaaccttatcagcaccagatctgaaa 10109
Query: 166 tacatgccggccacatctaaagccggtacttttgtgccgtcaacatccacgacatctttg 225
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10110 tacatgccggccacatctaaagccggtacttttgtgccgtcaacatccccgacatctttg 10169
Query: 226 ataccacctccgactgtcagtggtacaaacacagtcttggcagcaagtcttagcacatcc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10170 ataccacctccgactgtcagtggtacaaacacagtcttggcagcaagtcttagcacatcc 10229
Query: 286 aacattggagtatcctttaatggacagtttctgaaactggtgatatttaag-aaagtaac 344
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 10230 aacattggagtatcctttaatggacagtttttgaaactggtgatatttaagaaaagtaac 10289
Query: 345 ttcatcagcaccttgttcatagtaacgttgtgcgagctctacaggttttcccaagtttct 404
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10290 ttcatcagccccttgttcatagtaacgttgtgcgagctctacaggttttccccagtttct 10349
Query: 405 aacgttgcctccttctgttttttcacggacatcgtattggtccccttt 452
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10350 aacgttgcctccttctgttttttcacggacatcgtattggtccccttt 10397
>3x_Contig145
Length = 1450
Score = 430 bits (217), Expect = e-120
Identities = 293/309 (94%), Gaps = 8/309 (2%)
Strand = Plus / Plus
Query: 628 ccagatttctccggatggaattgtgtagaaaacacattatccttgtgaatggcggcaaca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagatttctccggatggaattgtgtagaaaacacattatccttgtgaatggcggcaaca 60
Query: 688 aatctttcgttaccgtatcttgtcaaagcaactttccatcccttactatgcaagtcatca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatctttcgttaccgtatcttgtcaaagcaactttccatcccttactatgcaagtcatca 120
Query: 748 agttgtacatcatcgacgatcatagcanaagaatgaacgaagtagtaccttttatangga 807
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 121 agttgtacatcatcgacgatcatagcaaaagaatgaacgaagtagtaccttttataagga 180
Query: 808 tctaaaccanattgaaagatcgtnctgttgaaataatggtattccatcccattttcggga 867
||||||||| | ||||||||||| ||| || |||||||||||||||| ||| ||||||||
Sbjct: 181 tctaaaccaaa-tgaaagatcgtcctg-tggaataatggtattccat-ccaatttcggga 237
Query: 868 acactttttaccttcactgnatattaaaattgggacaaagtacctggggattaaacctna 927
|||| |||||||||||||| ||| | ||||| ||||||||||||| |||||||||||| |
Sbjct: 238 acac-ttttaccttcactg-ata-tcaaatttggacaaagtacct-gggattaaacct-a 292
Query: 928 accctctgc 936
|||||||||
Sbjct: 293 accctctgc 301
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5990
Number of Sequences: 1807
Number of extensions: 5990
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)