BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC09FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig868 1025 0.0
>3x_Contig868
Length = 3693
Score = 1025 bits (517), Expect = 0.0
Identities = 568/578 (98%), Gaps = 7/578 (1%)
Strand = Plus / Plus
Query: 389 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69
Query: 449 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129
Query: 509 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 189
Query: 569 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atgcaaattgttttattccttcaaatttcattataacttttttcgtttgtttaaacttgt 249
Query: 629 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caaaaatttcatccaaaagatgactttatgggtcacgtgaacacatatcatctcgttaat 309
Query: 689 aatgattagcggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aatgattagcggtttttctcattgaacaatttgcagcaggatcaagctcatctcatctca 369
Query: 749 tctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttcag 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctcattgtaccgggctttaaagttatggaaatgataagtgaagctgaatttcggttcag 429
Query: 809 ttggtagtgtgaattttcacggtgaat-aacactaaacgatagatcgatgattacaaaac 867
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 430 ttggtagtgtgaattttcacggtgaatcaacactaaacgatagatcgatgattacaaaac 489
Query: 868 gggtctatgntnnggttctgtga-cagtaatcaggatgattgttttgca-aattgtatgc 925
||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 490 gggtctatgtt--ggttctgtgaccagtaatcaggatgattgttttgcagaattgtatgc 547
Query: 926 cana-ttctgaaatttggtaaagta-ttgttgaatcga 961
|| | |||||||||||||||||||| ||| ||||||||
Sbjct: 548 cagatttctgaaatttggtaaagtagttgatgaatcga 585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7824
Number of Sequences: 1807
Number of extensions: 7824
Number of successful extensions: 439
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)