BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC09RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1580 0.0
>3x_Contig1509
Length = 8584
Score = 1580 bits (797), Expect = 0.0
Identities = 885/911 (97%), Gaps = 5/911 (0%)
Strand = Plus / Minus
Query: 44 gctttaaaatgcggttcacttcacttctgttagaatacaaatatctgcatcgaaaatttt 103
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7058 gctttaaaatgcggttcacttcacaactgttagaatacaaatatctgcatcgaaaatttt 6999
Query: 104 cgactgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6998 cgactgggaatgacataaaagaaggtttagttaacgagtagctttgattttttaatcgaa 6939
Query: 164 tagaccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttcctt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6938 tagaccgaaacccatgtcatcgtcagattcttccttttcttcttccttttcttcttcctt 6879
Query: 224 ttcttcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccacc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6878 ttcttcttcagcagaagcgccagcagcaccagaagcagcagcagcaccagaggcaccacc 6819
Query: 284 agctgggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttacc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6818 agctgggacagaagccaacttggtttgaccttcagcaaccaattcttggatggtcttacc 6759
Query: 344 ttccaaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6758 ttccaaagaggtcaacaaagcttgaatcttagagtcttcagcttcaacaccaacggcttc 6699
Query: 404 aagaacgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6698 aagaacgttcttgatttcagtagcggatggagattcaacaccaccttgagcgatcaacaa 6639
Query: 464 gtaagctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6638 gtaagctgccaagtacttcatttctggtccggttttattttgaaataatcgatttaagca 6579
Query: 524 agaagcagactattccttggtctattaggaaatatgataataaataaataacaaaccaga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6578 agaagcagactattccttggtctattaggaaatatgataataaataaataacaaaccaga 6519
Query: 584 aagaacaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6518 aagaacaagaaacaaagagaggtttaagtatataataaatattcgaattatatagccttg 6459
Query: 644 tattaagttgaacaagttttaaactcttctcatctctattttnttttcttcaatttcatc 703
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6458 tattaagttgaacaagttttaaactcttctcatctctatttttttttcttcaatttcatc 6399
Query: 704 caananactttgcatcatcgtgaaaaatttcagactattctttgtnatcatgtacgacca 763
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6398 caagaaactttgcatcatcgtgaaaaatttcagactattctttgtaatcatgtacgacca 6339
Query: 764 ctcgctatttgttggttgtctcatganaaaag-tactaatcattatacacgnaaatacca 822
||||||| |||||||||||||||||| ||||| |||||||||||||||||| |||||| |
Sbjct: 6338 ctcgctaattgttggttgtctcatgaaaaaagttactaatcattatacacggaaatacaa 6279
Query: 823 cccacacgatatttgaaatct-agagtgccacgtcatat-tacatccgggtaacattcgt 880
|| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 6278 ccacaacgatatttg-aatctaagagtgccacgtcatatatacatccgggtaacattcgt 6220
Query: 881 aaattctgtttcgcattctnctttcttttggactcttggatcgcacncag-ttccattta 939
||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||
Sbjct: 6219 aaattctgtttcgcattctctttctttttggactcttggatcgcacgcagtttccattta 6160
Query: 940 nagnatcacaa 950
| |||||||
Sbjct: 6159 gaagatcacaa 6149
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,256
Number of Sequences: 1807
Number of extensions: 10256
Number of successful extensions: 286
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)