BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC10FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1595 1298 0.0
>3x_Contig1595
Length = 10795
Score = 1298 bits (655), Expect = 0.0
Identities = 690/698 (98%), Gaps = 3/698 (0%)
Strand = Plus / Minus
Query: 82 tgagatcgggatgaaccgtttggaatacttgatatcgtctttaagccatctcaaaaattt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 tgagatcgggatgaaccgtttggaatacttgatatcgtctttaagccatctcaaaaattt 1588
Query: 142 aaacataacggttcgacttggaaattgcagtattcctccagcaacagggcaatgatggtc 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 aaacataacggttcgacttggaaattgcagtattcctccagcaacagggcaatgatggtc 1528
Query: 202 atctttatccttgtcatataccactgattggtcttgaatctctaatttcaacgttttcca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 atctttatccttgtcatataccactgattggtcttgaatctctaatttcaacgttttcca 1468
Query: 262 ttgtttcaattccttgatcaggcttgcatccctccccttattctctttacattgtcctag 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 ttgtttcaattccttgatcaggcttgcatccctccccttattctctttacattgtcctag 1408
Query: 322 taaagattcataccgtttcagcaagtgatctaaacttgtggtatcaaccttgtacgactt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 taaagattcataccgtttcagcaagtgatctaaacttgtggtatcaaccttgtacgactt 1348
Query: 382 caaactctcagtaatcttctcaaccacttgttcccccactatagttactttagggtctgg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 caaactctcagtaatcttctcaaccacttgttcccccactatagttactttagggtctgg 1288
Query: 442 tgcctttttcatcgacagcagcgatgcgttccacacattattcaaatgattcaagaactg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 tgcctttttcatcgacagcagcgatgcgttccacacattattcaaatgattcaagaactg 1228
Query: 502 tgaaagccgcattatcgattgtatatcttgtgtaatcgcatcgtataacgaattaacact 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 tgaaagccgcattatcgattgtatatcttgtgtaatcgcatcgtataacgaattaacact 1168
Query: 562 cacggtgcttacggngctccaaaaagtgtaccttaaatccattactttggtgtgtgggat 621
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 cacggtgcttacggggctccaaaaagtgtaccttaaatccattactttggtgtgtgggat 1108
Query: 622 gcctaccacttacagagaagaatgttgttcgtgtttcgtaaat-gtatccaatgtatctt 680
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1107 gcctaccacttacagagaggaatgttgttcgtgtttcgtaaatagtatccaatgtatctt 1048
Query: 681 aaataagc-agtcattgacttttttcagcgaatactcttgaaaga-ttcaatagattgac 738
|||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1047 aaataagcaagtcatcgacttttttcagcgaatactcttgaaagatttcaatagattgac 988
Query: 739 aacacatcaaggcattgccatgcatttactatgaatgc 776
||||||||| ||||||||||||||| ||||||||||||
Sbjct: 987 aacacatcagggcattgccatgcatctactatgaatgc 950
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7534
Number of Sequences: 1807
Number of extensions: 7534
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)