BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC10RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1423 0.0
3x_Contig78 831 0.0
>3x_Contig1648
Length = 16375
Score = 1423 bits (718), Expect = 0.0
Identities = 828/857 (96%), Gaps = 7/857 (0%)
Strand = Plus / Plus
Query: 53 acttctacaagaccgctggtgtccaaatcgttgctgacgatttgactgtcaccaacccag 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 acttctacaagaccgctggtgtccaaatcgttgctgacgatttgactgtcaccaacccag 1081
Query: 113 tcagaatcgctactgctatcgaaaagaaggctgccgatgctctattgttgaaggtcaacc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 tcagaatcgctactgctatcgaaaagaaggctgccgatgctctattgttgaaggtcaacc 1141
Query: 173 aaatcggttctctatccgaatccatcaaggctgctaatgactccttcgctgctaactggg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 aaatcggttctctatccgaatccatcaaggctgctaatgactccttcgctgctaactggg 1201
Query: 233 gtgtcatggtctctcacagatctggtgaaactgaagacactttcattgctgacttggtcg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 gtgtcatggtctctcacagatctggtgaaactgaagacactttcattgctgacttggtcg 1261
Query: 293 tcggtctaagaactggtcaaattaagactggtgctccagctagatccgaaagattggcta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 tcggtctaagaactggtcaaattaagactggtgctccagctagatccgaaagattggcta 1321
Query: 353 aattgaaccaattgctaagaattgaagaagaattgggttccaacgctatcttcgctggta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 aattgaaccaattgctaagaattgaagaagaattgggttccaacgctatcttcgctggta 1381
Query: 413 agaagttccacaacggtaaccaattgtaagtgaaattaaattaaaactatatttttctta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 agaagttccacaacggtaaccaattgtaagtgaaattaaattaaaactatatttttctta 1441
Query: 473 tttcccttcgtttctcttccccttaatgactatagtatgtacataacaatatagatatgt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1442 tttcccttcgtttctcttccccttaatgactatagtatgtacataacaatatagatatgt 1501
Query: 533 atgtaccattctttactacaactaaattaaacttaacgtatacacatcttttctcaatat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1502 atgtaccattctttactacaactaaattaaacttaacgtatacacatcttttctcaatat 1561
Query: 593 taaagactttagtagctntctttattcctaaaggtatctggttcctatataaatattatc 652
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1562 taaagactttagtagctttctttattcctaaaggtatctggttcctatat-aatattatc 1620
Query: 653 -tacta-tatcttacaacaatcgttcaaacttttat-aaaaggcatanaccttna-taac 708
||||| ||||||||||||||||||||||||||||| |||||||||| ||||| | ||||
Sbjct: 1621 ttactattatcttacaacaatcgttcaaacttttataaaaaggcataaacctttattaac 1680
Query: 709 acttcactgaacaccacaaccacacttttaaatctnncaacggcatcagaacaataat-a 767
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 1681 acttcactgaacaccacaaccacacttttaaatctccaaacggcatcagaacaataataa 1740
Query: 768 aacagtaccgaataaaataattgacgcatacaatggtctctcatcaccatccagcagaac 827
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1741 aacagtaccgaataaaataattgacgcatacaatgtcttctcatcaccatccagcagaac 1800
Query: 828 cctgaacaggaagtggttttatgaaattgaccttcaatgggaacactgaaaacgcttgcc 887
| |||||| | ||| |||| | ||||||||||| ||||||||||||||| ||| |
Sbjct: 1801 ctgaaacaggtatgtgttctatggatatgaccttcaattggaacactgaaaacgtttg-c 1859
Query: 888 gttgtattcaaatcatg 904
|||||||||||||||||
Sbjct: 1860 gttgtattcaaatcatg 1876
>3x_Contig78
Length = 876
Score = 831 bits (419), Expect = 0.0
Identities = 422/423 (99%)
Strand = Plus / Plus
Query: 53 acttctacaagaccgctggtgtccaaatcgttgctgacgatttgactgtcaccaacccag 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 acttctacaagaccgctggtgtccaaatcgttgctgacgatttgactgtcaccaacccag 212
Query: 113 tcagaatcgctactgctatcgaaaagaaggctgccgatgctctattgttgaaggtcaacc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcagaatcgctactgctatcgaaaagaaggctgccgatgctctattgttgaaggtcaacc 272
Query: 173 aaatcggttctctatccgaatccatcaaggctgctaatgactccttcgctgctaactggg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaatcggttctctatccgaatccatcaaggctgctaatgactccttcgctgctaactggg 332
Query: 233 gtgtcatggtctctcacagatctggtgaaactgaagacactttcattgctgacttggtcg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgtcatggtctctcacagatctggtgaaactgaagacactttcattgctgacttggtcg 392
Query: 293 tcggtctaagaactggtcaaattaagactggtgctccagctagatccgaaagattggcta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcggtctaagaactggtcaaattaagactggtgctccagctagatccgaaagattggcta 452
Query: 353 aattgaaccaattgctaagaattgaagaagaattgggttccaacgctatcttcgctggta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aattgaaccaattgctaagaattgaagaagaattgggttccaacgctatcttcgctggta 512
Query: 413 agaagttccacaacggtaaccaattgtaagtgaaattaaattaaaactatatttttctta 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 agaagttccacaacggtaaccaattgtaagtgaaattaaattaaaactatatttttatta 572
Query: 473 ttt 475
|||
Sbjct: 573 ttt 575
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7325
Number of Sequences: 1807
Number of extensions: 7325
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 2
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)