BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC11FM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1480 1618 0.0
>3x_Contig1480
Length = 8659
Score = 1618 bits (816), Expect = 0.0
Identities = 865/876 (98%), Gaps = 6/876 (0%)
Strand = Plus / Minus
Query: 90 cgaatggatcagatttcccattacggtctgaagaaattaaatcattggcactcttaatat 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6715 cgaatggatcagatttcccattacggtctgaagaaattaaatcattggcactcttaatat 6656
Query: 150 taatcttcaagtcaccgcagtttgtaatcaaatcggattgtggcaactttgttacagaga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6655 taatcttcaagtcaccgcagtttgtaatcaaatcggattgtggcaactttgttacagaga 6596
Query: 210 tggggaaccatgaaacttggaccattattttggcgctactaggtccagttaatgataaga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6595 tggggaaccatgaaacttggaccattattttggcgctactaggtccagttaatgataaga 6536
Query: 270 tagatggtttgtaataacaattcttcaataactcaattgttgggatggtgacttcacaca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6535 tagatggtttgtaataacaattcttcaataactcaattgttgggatggtgacttcacaca 6476
Query: 330 aacaatcttctgctttgttcagatttttatcttttgaaactctaaaagtggtggtggacc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6475 aacaatcttctgctttgttcagatttttatcttttgaaactctaaaagtggtggtggacc 6416
Query: 390 attctaattctttaattataacatcacccaccattccacttctgaaagatctcgtagggc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6415 attctaattctttaattataacatcacccaccattccacttctgaaagatctcgtagggc 6356
Query: 450 tcttttgtgagacaaaacgagcatacccatttgcatcaaaaaaggcctgcaaataacatc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6355 tcttttgtgagacaaaacgagcatacccatttgcatcaaaaaaggcctgcaaataacatc 6296
Query: 510 cttgttgaggcaattcgccgctgagaatgtacacagatagaacaccactgttgtattgta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295 cttgttgaggcaattcgccgctgagaatgtacacagatagaacaccactgttgtattgta 6236
Query: 570 aaagctcatcgagatcaagcttcatctttgaactgtacatatcttcgagttctttcaatt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6235 aaagctcatcgagatcaagcttcatctttgaactgtacatatcttcgagttctttcaatt 6176
Query: 630 cttcttcctcctcatccaacttagctttcaactcaacgttcttcttgtcaccaatctttt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 cttcttcctcctcatccaacttagctttcaactcaacgttcttcttgtcaccaatctttt 6116
Query: 690 caaattctgctttagacttctcccaattagccttcttcttcgagatttcatccatttctt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6115 caaattctgctttagacttctcccaattagccttcttcttcgagatttcatccatttctt 6056
Query: 750 gaatttcttctaga-acaggacaggtacggcaggatagaatgacgcantatangtaatga 808
|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 6055 gaatttcttctagagacaggacaggtacggcaggatagaatgacgcataataggtaatga 5996
Query: 809 cacctttggcaccctncttactaacgagattaccggnttttaggttcatcatcaatatgt 868
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5995 cacctttggcacccttcttactaacgagattaccgg-ttttaggttcatcatcaatatgt 5937
Query: 869 gctatgtatttatcgtcagaacctttttgggacatatcggaa--tggaatatcaacttta 926
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 5936 gctatgtatttatcgtcagaacctttttggaacatatcggaaattggaatatcaacttta 5877
Query: 927 ccc-atgaacgatcctctccagc-tattccacatca 960
||| ||||||||||||||||||| ||||||||||||
Sbjct: 5876 cccaatgaacgatcctctccagcatattccacatca 5841
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8018
Number of Sequences: 1807
Number of extensions: 8018
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)