BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZC11RM1.SCF screened BAC_end
         (955 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1780                                                        1602   0.0  

>3x_Contig1780 
          Length = 27883

 Score = 1602 bits (808), Expect = 0.0
 Identities = 877/896 (97%), Gaps = 5/896 (0%)
 Strand = Plus / Plus

                                                                         
Query: 38    atcacgcttatactgcgcatattgtgttttaatagcaccgtcggctcgtagcttatccca 97
             |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 19528 atcaagcttatactgcgcatattgtgtttcaatagcaccgtcggctcgtagcttatccca 19587

                                                                         
Query: 98    tgtaggtgcattttcgttacgtttgtaattaatgatcccagtatcatataagttggctac 157
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19588 tgtaggtgcattttcgttacgtttgtaattaatgatcccagtatcatataagttggctac 19647

                                                                         
Query: 158   gtctccaacggtgtacatcttagtgacatctgacggagcaaacaaggtaaaccttttact 217
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 19648 gtctccaacggtgtacatcttagtgacatctgacggagcaaacaaggtaaaccttttacg 19707

                                                                         
Query: 218   gtcacttacaggaatatatatgttatcggcatgatcatgatgaagtccagatgatgatcc 277
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19708 gccacttacaggaatatatatgttatcggcatgatcatgatgaagtccagatgatgatcc 19767

                                                                         
Query: 278   acctcctggaatatttcgtccaagacctaatttttcatcgttcgggtcgaaattgccaag 337
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19768 acctcctggaatatttcgtccaagacctaatttttcatcgttcgggtcgaaattgccaag 19827

                                                                         
Query: 338   aaaactttgatcactatccttttcactggcagatccgacccatatgtttatttgttgggg 397
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19828 aaaactttgatcactatccttttcactggcagatccgacccatatgtttatttgttgggg 19887

                                                                         
Query: 398   cactaacttcaagaagtgtaattgctctggaatttcgtttactaacttatcaagcggagg 457
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19888 cactaacttcaagaagtgtaattgctctggaatttcgtttactaacttatcaagcggagg 19947

                                                                         
Query: 458   ttgatatagttcccttacagcagctaaatcgtcggcacttccctcttcatttccatcatc 517
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19948 ttgatatagttcccttacagcagctaaatcgtcggcacttccctcttcatttccatcatc 20007

                                                                         
Query: 518   actgtcatcattttcttgcatttcctcaaaatcatcgcgaaggtcattgaaatttattga 577
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20008 actgtcatcattttcttgcatttcctcaaaatcatcgcgaaggtcattgaaatttattga 20067

                                                                         
Query: 578   atccacagagcccacttccgaaacgtcatctggaaacatatttctcccacattcagcgga 637
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20068 atccacagagcccacttccgaaacgtcatctggaaacatatttctcccacattcagcgga 20127

                                                                         
Query: 638   gtcttcctcctccgattcttcgtcgtcatctaacggcgtctcttcctcatcttgtgaacc 697
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20128 gtcttcctcctccgattcttcgtcgtcatctaacggcgtctcttcctcatcttgtgaacc 20187

                                                                         
Query: 698   ttctccctctatttcgtgctcagcatattgggttgtcaaatataaatcgtgattaccatn 757
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 20188 ttctccctctatttcgtgctcagcatattgggttgtcaaatataaatcgtgattaccatt 20247

                                                                         
Query: 758   ttgtaatttgtctantaaatcatgaaacttcatgaacactcttttgctgncagatcccga 817
             ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||  |
Sbjct: 20248 ttgtaatttgtctataaaatcatgaaacttcatgaacactcttttgctgccagatccgaa 20307

                                                                         
Query: 818   tccaccgtttgatttctgctctatttgcaacacttcattatctaacgtttctttgata-t 876
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 20308 tccaccgtttgatttctgctctatttgcaacacttcattatctaacgtttctttgatatt 20367

                                                                     
Query: 877   ttccggttccaaagaattccaat--gaatctttagatg-ctga-taaatttacacg 928
             |||||||| ||||  ||||||||   |||||||||||| |||| ||||||||||||
Sbjct: 20368 ttccggtttcaaaagattccaattgaaatctttagatgcctgattaaatttacacg 20423


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6937
Number of Sequences: 1807
Number of extensions: 6937
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)