BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC22ZC11RM1.SCF screened BAC_end (955 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1780 1602 0.0 >3x_Contig1780 Length = 27883 Score = 1602 bits (808), Expect = 0.0 Identities = 877/896 (97%), Gaps = 5/896 (0%) Strand = Plus / Plus Query: 38 atcacgcttatactgcgcatattgtgttttaatagcaccgtcggctcgtagcttatccca 97 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 19528 atcaagcttatactgcgcatattgtgtttcaatagcaccgtcggctcgtagcttatccca 19587 Query: 98 tgtaggtgcattttcgttacgtttgtaattaatgatcccagtatcatataagttggctac 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19588 tgtaggtgcattttcgttacgtttgtaattaatgatcccagtatcatataagttggctac 19647 Query: 158 gtctccaacggtgtacatcttagtgacatctgacggagcaaacaaggtaaaccttttact 217 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19648 gtctccaacggtgtacatcttagtgacatctgacggagcaaacaaggtaaaccttttacg 19707 Query: 218 gtcacttacaggaatatatatgttatcggcatgatcatgatgaagtccagatgatgatcc 277 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19708 gccacttacaggaatatatatgttatcggcatgatcatgatgaagtccagatgatgatcc 19767 Query: 278 acctcctggaatatttcgtccaagacctaatttttcatcgttcgggtcgaaattgccaag 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19768 acctcctggaatatttcgtccaagacctaatttttcatcgttcgggtcgaaattgccaag 19827 Query: 338 aaaactttgatcactatccttttcactggcagatccgacccatatgtttatttgttgggg 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19828 aaaactttgatcactatccttttcactggcagatccgacccatatgtttatttgttgggg 19887 Query: 398 cactaacttcaagaagtgtaattgctctggaatttcgtttactaacttatcaagcggagg 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19888 cactaacttcaagaagtgtaattgctctggaatttcgtttactaacttatcaagcggagg 19947 Query: 458 ttgatatagttcccttacagcagctaaatcgtcggcacttccctcttcatttccatcatc 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19948 ttgatatagttcccttacagcagctaaatcgtcggcacttccctcttcatttccatcatc 20007 Query: 518 actgtcatcattttcttgcatttcctcaaaatcatcgcgaaggtcattgaaatttattga 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20008 actgtcatcattttcttgcatttcctcaaaatcatcgcgaaggtcattgaaatttattga 20067 Query: 578 atccacagagcccacttccgaaacgtcatctggaaacatatttctcccacattcagcgga 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20068 atccacagagcccacttccgaaacgtcatctggaaacatatttctcccacattcagcgga 20127 Query: 638 gtcttcctcctccgattcttcgtcgtcatctaacggcgtctcttcctcatcttgtgaacc 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20128 gtcttcctcctccgattcttcgtcgtcatctaacggcgtctcttcctcatcttgtgaacc 20187 Query: 698 ttctccctctatttcgtgctcagcatattgggttgtcaaatataaatcgtgattaccatn 757 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20188 ttctccctctatttcgtgctcagcatattgggttgtcaaatataaatcgtgattaccatt 20247 Query: 758 ttgtaatttgtctantaaatcatgaaacttcatgaacactcttttgctgncagatcccga 817 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | Sbjct: 20248 ttgtaatttgtctataaaatcatgaaacttcatgaacactcttttgctgccagatccgaa 20307 Query: 818 tccaccgtttgatttctgctctatttgcaacacttcattatctaacgtttctttgata-t 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 20308 tccaccgtttgatttctgctctatttgcaacacttcattatctaacgtttctttgatatt 20367 Query: 877 ttccggttccaaagaattccaat--gaatctttagatg-ctga-taaatttacacg 928 |||||||| |||| |||||||| |||||||||||| |||| |||||||||||| Sbjct: 20368 ttccggtttcaaaagattccaattgaaatctttagatgcctgattaaatttacacg 20423 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6937 Number of Sequences: 1807 Number of extensions: 6937 Number of successful extensions: 41 Number of sequences better than 1.0e-20: 1 length of query: 955 length of database: 10,358,551 effective HSP length: 16 effective length of query: 939 effective length of database: 10,329,639 effective search space: 9699531021 effective search space used: 9699531021 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)