BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC12FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 1146 0.0
3x_Contig849 111 3e-24
>3x_Contig1512
Length = 8803
Score = 1146 bits (578), Expect = 0.0
Identities = 581/582 (99%)
Strand = Plus / Minus
Query: 85 ctttacaaacaaagaaaattcgatgaagctattgaaaaatacaatgaagcttgggaaact 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctttacaaacaaagaaaattcgatgaagctattgaaaaatacaatgaagcttgggaaact 523
Query: 145 cataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaaggtgattac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cataatgacatcacgtatctaaacaaccgtgctgcagcagaatatgaaaaaggtgattac 463
Query: 205 gaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcagagctgat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaggcagccatcgaaactctaacaaaggctgtggaacaaggtagagaactcagagctgat 403
Query: 265 tacaaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagcttggcgat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tacaaagtcatttcaaaatctttcgctcgtatgggtaactcttaccacaagcttggcgat 343
Query: 325 ttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccagatatc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccagatatc 283
Query: 385 ttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatcttacatg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatcttacatg 223
Query: 445 gaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaaggctgac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaaggctgac 163
Query: 505 tggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatgccaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatgccaga 103
Query: 565 ggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgccattaga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgccattaga 43
Query: 625 gactgtgacaaagccatcgagaaggatccaaactttgtcaga 666
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 42 gactgtgacaaagccatcgagaaagatccaaactttgtcaga 1
>3x_Contig849
Length = 3479
Score = 111 bits (56), Expect = 3e-24
Identities = 89/96 (92%), Gaps = 3/96 (3%)
Strand = Plus / Minus
Query: 885 cagaagttgcatcatttttaccagaccctgtca-tgcaatctatactctcacaagctcag 943
|||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3479 cagaagttgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcag 3420
Query: 944 caaaat-ctgctgctttaca-gaacacatgagaaac 977
|||||| ||||||||||| | |||||||||||||||
Sbjct: 3419 caaaatcctgctgctttaaaggaacacatgagaaac 3384
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6482
Number of Sequences: 1807
Number of extensions: 6482
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)