BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZC12RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1717 0.0
>3x_Contig1801
Length = 57606
Score = 1717 bits (866), Expect = 0.0
Identities = 918/934 (98%), Gaps = 2/934 (0%)
Strand = Plus / Plus
Query: 43 gctttgaaatataaaagaaggttgttttgaatcaaacgtattactaactttcactaaaga 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 19747 gctttgaaatataaaagaaggttgcaatgaatcaaacgtattactaactttcactaaaga 19806
Query: 103 tatataaaactgtgtggcgacaagtggtttgaacagtatcagaaggtgtgggtaatatga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807 tatataaaactgtgtggcgacaagtggtttgaacagtatcagaaggtgtgggtaatatga 19866
Query: 163 gcaacgatttactggccaatttaaatgcgttcaagaacaaggtgaagactttncctgcgt 222
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 19867 gcaacgatttactggccaatttaaatgcgttcaagaacaaggtgaagacttctccagcgc 19926
Query: 223 tcactacaaggaaagttttagctaataaagatagagatggacaaacgaatgggaacggta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19927 tcactacaaggaaagttttagctaataaagatagagatggacaaacgaatgggaacggta 19986
Query: 283 aatctacggaagtgatagaagtggatgatccaaattccgatgagaaggatatgcctctga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19987 aatctacggaagtgatagaagtggatgatccaaattccgatgagaaggatatgcctctga 20046
Query: 343 agaaaagggccaagagtagtagcgtcgctccaacgggccagttggatagtacacatcttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20047 agaaaagggccaagagtagtagcgtcgctccaacgggccagttggatagtacacatcttt 20106
Query: 403 ccacgaagatgcttatagccacagaatatatccaagaaagaggggaagcagtaccggtag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20107 ccacgaagatgcttatagccacagaatatatccaagaaagaggggaagcagtaccggtag 20166
Query: 463 atcaaatcgaatcatatctttcgttacctaaggataataatgtgattccgatgttaaagg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20167 atcaaatcgaatcatatctttcgttacctaaggataataatgtgattccgatgttaaagg 20226
Query: 523 ggttacaaaaattcaagtttgacccaaagaggaacactttacagtacgtatccatttacg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20227 ggttacaaaaattcaagtttgacccaaagaggaacactttacagtacgtatccatttacg 20286
Query: 583 atgtgcattctgcggaggaattgctacaactattaagatcacaggcgacgttcaagggta 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20287 atgtgcattctgcggaggaattgctacaactattaagatcacaggcgacgttcaagggta 20346
Query: 643 tatcatgtaaagagttaaaagatggttggccacaatgttttgatacaatcgacgagttag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20347 tatcatgtaaagagttaaaagatggttggccacaatgttttgatacaatcgacgagttag 20406
Query: 703 aagcaaagaacagaatccttgttcttcggacaaagaaggataattctccaaggtttgtct 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20407 aagcaaagaacagaatccttgttcttcggacaaagaaggataattctccaaggtttgtct 20466
Query: 763 ggtataaccatgctggtccatcaaggcaaatcgatgaagagttcgttacgatgtgggaag 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20467 ggtataaccatgctggtccatcaaggcaaatcgatgaagagttcgttacgatgtgggaag 20526
Query: 823 cttgtaagctacctcagcgtagtgaattaccaagaaaactancagatttgggtctcaagc 882
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 20527 cttgtaagctacctcagcgtagtgaattaccaagaaaactacaagatttgggtctcaagc 20586
Query: 883 ctgctagtgtggatcctgctacgatcaagaaatgagc-aaccacaaggaaagagggtcag 941
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct: 20587 ctgctagtgtggatcctgctacgatcaag-aatgagcaaaccacaaggaaagaggtcaag 20645
Query: 942 aaacgtagatcaagaaagggtnaagttaccnata 975
||||||||||||||||||||| |||||||| |||
Sbjct: 20646 aaacgtagatcaagaaagggtaaagttaccaata 20679
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6694
Number of Sequences: 1807
Number of extensions: 6694
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)