BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD02FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1610 0.0
>3x_Contig1475
Length = 10676
Score = 1610 bits (812), Expect = 0.0
Identities = 873/889 (98%), Gaps = 4/889 (0%)
Strand = Plus / Plus
Query: 82 accgcaaaggaagagcactcatcaagagtccaagtcctagtttattcgaacaaaaaattc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2696 accgcaaaggaagagcactcatcaagagtccaagtcctagtttattcgaacaaaaaattc 2755
Query: 142 ttagagaaaaattgttgcggtttcaaattagatacggaaaagaagagatacgtccataca 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2756 ttagagaaaaattgttgcggtttcaaattagatacggaaaagaagagatacgtccataca 2815
Query: 202 gctgttaaaagggttaaagccaactcactgcccaatattgctaaaccagagtccgtaaca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2816 gctgttaaaagggttaaagccaactcactgcccaatattgctaaaccagagtccgtaaca 2875
Query: 262 aaaagcttctccatcgatggtgctggatcgggaaagatatacccacagaaaaatggattc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2876 aaaagcttctccatcgatggtgctggatcgggaaagatatacccacagaaaaatggattc 2935
Query: 322 agtgtggctttcactactagagagaacagtaacgcatcaggtggaagtagtatggacatg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2936 agtgtggctttcactactagagagaacagtaacgcatcaggtggaagtagtatggacatg 2995
Query: 382 tctacatcgccacattatactgaagaagctgtgaaagataacacgactcctgctaaccct 441
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct: 2996 tctacatcgccacattatactgaagaagctgtgaaagataacacgaatactgctaaccgt 3055
Query: 442 gtatggaattacagtggttcttctgctccccaaccgccactgagttttaatgtcacgcca 501
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3056 gtatggaattacagtggttcttctgctcnccaaccgccactgagttttaatgtcacgcca 3115
Query: 502 tcattttccgtctcaaccacagttgaaagaagtgagaatgaaaaatctttcagtttgtac 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3116 tcattttccgtctcaaccacagttgaaagaagtgagaatgaaaaatctttcagtttgtac 3175
Query: 562 aataggaccgagatgtcaaatcacggcaacaacagtgctagcacaaatactagcaatggc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3176 aataggaccgagatgtcaaatcacggcaacaacagtgctagcacaaatactagcaatggc 3235
Query: 622 tctgtttcatctcctttttcatctatccatgttcaaagttcgtcctcttcgataccactg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3236 tctgtttcatctcctttttcatctatccatgttcaaagttcgtcctcttcgataccactg 3295
Query: 682 tcttccactaacaccaatggcagttctactgattccagagaaaatagtaacggccttaat 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3296 tcttccactaacaccaatggcagttctactgattccagagaaaatagtaacggccttaat 3355
Query: 742 gaagctcctaaacttaatgtccagaatctgtccactttcaactatttacagaacgcttcg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3356 gaagctcctaaacttaatgtccagaatctgtccactttcaactatttacagaacgcttcg 3415
Query: 802 catgattctcaaat-agtatatttgccagggacagtgttgntatgtcatcccaggcgaac 860
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3416 catgattctcaaataagtatatttgccagggacagtgttgttatgtcatcccaggcgaac 3475
Query: 861 aactncgctggtctgtacgaacaagctcaacagagaacatatatggggctcccataatg- 919
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 3476 aactccgctggtctgtacgaacaagctcaacagagaacatatat-gggctcccaatatgc 3534
Query: 920 ccaaatccattattcattcacttcgttctca-cacaatttgacaccttg 967
|||| ||||| || ||||||||||||||||| |||||||||||| ||||
Sbjct: 3535 ccaattccataatccattcacttcgttctcaccacaatttgacaacttg 3583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6111
Number of Sequences: 1807
Number of extensions: 6111
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)