BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD03FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1289 0.0
>3x_Contig1400
Length = 8536
Score = 1289 bits (650), Expect = 0.0
Identities = 677/684 (98%), Gaps = 3/684 (0%)
Strand = Plus / Minus
Query: 269 cctcaattgatcattgctactcatatctcgtttgcactattgctttgcgtgttgggatcg 328
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8536 cctcaattgatcattgctactcatatctcgtttgcactaatgctttgcgtgttgggatcg 8477
Query: 329 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 8417
Query: 389 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 8357
Query: 449 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 8297
Query: 509 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 8237
Query: 569 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 8177
Query: 629 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 8117
Query: 689 atagacttgtaacatttgggaaccatataaaatttaattcaaatacaaaggttgcagaag 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8116 atagacttgtaacatttgggaaccatataaaatttaattcaaatacaaaggttgcagaag 8057
Query: 749 ccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacatcct 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8056 ccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacatcct 7997
Query: 809 aaatagctgccttccgtttcctttttcactcttcgntattgtttcatgcataatccatac 868
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 7996 aaatagctgccttccgtttcctttttcactcttcgttattgtttcatgcataatccatac 7937
Query: 869 atttcatgttcgctcgggacttctatggcattcagaattcgttttgag--aaaaaaaaaa 926
||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 7936 atttcatgttcgctcggaacttctatggcattcagatttcgttttgagaaaaaaaaaaaa 7877
Query: 927 atatg-acggaaagtaaatgaatc 949
||||| ||||||||||||||||||
Sbjct: 7876 atatgaacggaaagtaaatgaatc 7853
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,021
Number of Sequences: 1807
Number of extensions: 12021
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)