BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD04FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1566 0.0
>3x_Contig1699
Length = 18038
Score = 1566 bits (790), Expect = 0.0
Identities = 842/853 (98%), Gaps = 5/853 (0%)
Strand = Plus / Plus
Query: 86 cattcctctttcatatctccacttcataccatatttcatgggaataagaattaaaaagtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13816 cattcctctttcatatctccacttcataccatatttcatgggaataagaattaaaaagtt 13875
Query: 146 cccaacgaaaaccattccactgatgcaggtgaatgtcccaccaacgttcatcgatgattt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13876 cccaacgaaaaccattccactgatgcaggtgaatgtcccaccaacgttcatcgatgattt 13935
Query: 206 catttttgagaaacatgccatgaaaattgcagacaatacgcaacgcatgaaattgtaaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13936 catttttgagaaacatgccatgaaaattgcagacaatacgcaacgcatgaaattgtaaca 13995
Query: 266 gcttgttgctgttgaggatttacttgggtataaatcgaccaaaagcgtacttgaagtaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13996 gcttgttgctgttgaggatttacttgggtataaatcgaccaaaagcgtacttgaagtaga 14055
Query: 326 aagagtactcatagcacaaaacgagccgatgaaggatgtaactaaaacaactgcaatgtg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14056 aagagtactcatagcacaaaacgagccgatgaaggatgtaactaaaacaactgcaatgtg 14115
Query: 386 ccacctttgcttcagtgcccatccgaatagagtgaaaaccacagcagcgcaaacattttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14116 ccacctttgcttcagtgcccatccgaatagagtgaaaaccacagcagcgcaaacattttg 14175
Query: 446 aggagcaccagaaattaatctagccttaaaggtattaaatcttgcatctttatcgataag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14176 aggagcaccagaaattaatctagccttaaaggtattaaatcttgcatctttatcgataag 14235
Query: 506 acctgcctctttcttctccaagaactttttatgggaccttttataatacacatcaataat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 acctgcctctttcttctccaagaactttttatgggaccttttataatacacatcaataat 14295
Query: 566 ttttcctgtacagaaagatcctaacaagccaccgataccagagggtaaatagcatacacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296 ttttcctgtacagaaagatcctaacaagccaccgataccagagggtaaatagcatacacc 14355
Query: 626 aatcatagtcaatgagtagtcgtatggatctaatgcaagttccgctggaagagaagcaag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14356 aatcatagtcaatgagtagtcgtatggatctaatgcaagttccgctggaagagaagcaag 14415
Query: 686 agaaagagtccataaggaaaattggaatgcagcggggagaagtgataagatgatttctgg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14416 agaaagagtccataaggaaaattggaatgcagcggggagaagtgataagatgatttctgg 14475
Query: 746 gcatataagaattctcattgctngagtgatatcgaacttcactttctgat-agtctcttg 804
|||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct: 14476 caatataagaattctcattgctgaggtgatatcgaacttcac-ttctgataagtctcttg 14534
Query: 805 atgaataatctggatttatcata-ttgaattgcttccttattgcaggcaaacgagttatt 863
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14535 atgaataatctgga-ttatcatatttgaattgcttccttattgcaggcaaacgagttatt 14593
Query: 864 ggggctatatttatccaactttttggtctaatagataatttccccac-atggtacgtttg 922
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 14594 ggggctatatttatccaactttttggtctaatagataagttccccacaatggtacgtttg 14653
Query: 923 gtttcaattagca 935
|||||||||||||
Sbjct: 14654 gtttcaattagca 14666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6822
Number of Sequences: 1807
Number of extensions: 6822
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)