BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD04RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1622 0.0
3x_Contig67 280 5e-75
>3x_Contig1779
Length = 24855
Score = 1622 bits (818), Expect = 0.0
Identities = 863/872 (98%), Gaps = 5/872 (0%)
Strand = Plus / Plus
Query: 48 tcacctgaggatatagtgctgggaacagaatcactcaagaagtcgttaaaagtctggtgc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14986 tcacctgaggatatagtgctgggaacagaatcactcaagaagtcgttaaaagtctggtgc 15045
Query: 108 aaagagttgaaaaagaataaccttattgataggctagatgacccgtccgtacaagaagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15046 aaagagttgaaaaagaataaccttattgataggctagatgacccgtccgtacaagaagaa 15105
Query: 168 tgtgtcgataaattaaaacagcaaattgacaatttggcacgagaagaagatacgacatct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15106 tgtgtcgataaattaaaacagcaaattgacaatttggcacgagaagaagatacgacatct 15165
Query: 228 ctgtttgtagattgggttcgtgacacactattatgatggcctgtttgtaacacttattag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15166 ctgtttgtagattgggttcgtgacacactattatgatggcctgtttgtaacacttattag 15225
Query: 288 taagtacagacaattaaatagcaaccaaaagtactttttgccgtgatcgtgtctgcgtct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15226 taagtacagacaattaaatagcaaccaaaagtactttttgccgtgatcgtgtctgcgtct 15285
Query: 348 ggaagttgtgttataattaggggttttaaagggagcagcagcacacacgagctattaagg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15286 ggaagttgtgttataattaggggttttaaagggagcagcagcacacacgagctattaagg 15345
Query: 408 tgtttttgagatatgcgccgcagcggatatcgttaccagatacttaaccgcacgccctcc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15346 tgtttttgagatatgcgccgcagcggatatcgttaccagatacttaaccgcacgccctcc 15405
Query: 468 gctcaatgtcccagtttccctctttttcatttttttggttgtactttcagtgtttgctga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15406 gctcaatgtcccagtttccctctttttcatttttttggttgtactttcagtgtttgctga 15465
Query: 528 gagcaatgaaatatcggtattatataataaatcatcagtatgttagcaaaggacattggt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15466 gagcaatgaaatatcggtattatataataaatcatcagtatgttagcaaaggacattggt 15525
Query: 588 aaaataccggtatacaatattgttcgtaacggagaaacaaaaaatatttgcaatactcaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15526 aaaataccggtatacaatattgttcgtaacggagaaacaaaaaatatttgcaatactcaa 15585
Query: 648 ttctgcgggtgttaaatattgcagatagtggaagataaatcagccaacgcaccaagcaga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15586 ttctgcgggtgttaaatattgcagatagtggaagataaatcagccaacgcaccaagcaga 15645
Query: 708 actttgaatgtataaatatctgctattacgggcggtgttgtcctttccattttcctgatg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15646 actttgaatgtataaatatctgctattacgggcggtgttgtcctttccattttcctgatg 15705
Query: 768 ctgcccaattacccatcttcttggtcattgaatagatataagtaacatcttaaatctaac 827
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 15706 ctgcccaattacccatcttcttggtcattgaatagatataagtaacatctaaaatctaa- 15764
Query: 828 ccgtc-aatcagggctcatcaac-atgttacatccactatncactgaaaattactttacc 885
||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct: 15765 ccgtcaaatca-ggctcatcaacaatgttacatccactatccactgaaatttactttacc 15823
Query: 886 ttcaac-atggnaacaaggtccctgcttttgg 916
|||||| |||| ||||||||||||||||||||
Sbjct: 15824 ttcaacaatggaaacaaggtccctgcttttgg 15855
>3x_Contig67
Length = 1086
Score = 280 bits (141), Expect = 5e-75
Identities = 148/149 (99%), Gaps = 1/149 (0%)
Strand = Plus / Plus
Query: 155 cgtacaagaagaatgtgtcgataaattaaaacagcaaattgacaatttggcacgagaaga 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 cgtacaagaagaatgtgtcgataaattaaaacagcaaattgacaatttggcacgagaaga 75
Query: 215 agatacgacatctctgtttgtagattggg-ttcgtgacacactattatgatggcctgttt 273
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 76 agatacgacatctctgtttgtagattgggcttcgtgacacactattatgatggcctgttt 135
Query: 274 gtaacacttattagtaagtacagacaatt 302
|||||||||||||||||||||||||||||
Sbjct: 136 gtaacacttattagtaagtacagacaatt 164
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6934
Number of Sequences: 1807
Number of extensions: 6934
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 2
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)