BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD05RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1635 0.0
>3x_Contig1697
Length = 16220
Score = 1635 bits (825), Expect = 0.0
Identities = 912/931 (97%), Gaps = 9/931 (0%)
Strand = Plus / Plus
Query: 45 gcttttaatgggaattaaaaaaa-accaaacgaaaacaaatagtagcgagcaacaaagag 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2516 gcttttaatgggaattaaaaaaacaccaaacgaaaacaaatagtagcgagcaacaaagag 2575
Query: 104 acagatagtacttggtttctaccttgtttatgaggctggccaaaagataagatactatta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 acagatagtacttggtttctaccttgtttatgaggctggccaaaagataagatactatta 2635
Query: 164 agatggggaatgtaaactgaactacaaaagacaaatactaaaaactaaaatatatatata 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2636 agatggggaatgtaaactgaactacaaaagacaaatactaaaaactaaaatatata-ata 2694
Query: 224 tcacagtaagtagtatgtaacaaagtaatgagacagggaatagtgtaatgtattgatgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2695 tcacagtaagtagtatgtaacaaagtaatgagacagggaatagtgtaatgtattgatgct 2754
Query: 284 tatatttcaaaattcaaatccaaatccaaacacaaatcccaagacccaactcccaaatcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2755 tatatttcaaaattcaaatccaaatccaaacacaaatcccaagacccaactcccaaatcc 2814
Query: 344 taatctcttagccaagtttctatttctgtttcctgtttcctattttccaacttcatcttc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2815 taatctcttagccaagtttctatttctgtttcctgtttcctattttccaacttcatcttc 2874
Query: 404 ttatccatgacaagaaacagaaacctttccaataatttttgccagtttcttttgttccga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 ttatccatgacaagaaacagaaacctttccaataatttttgccagtttcttttgttccga 2934
Query: 464 cgacatactaatgctgtgtgcaatgtggtaacagggaaattgtaggcaatggggaaaaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2935 cgacatactaatgctgtgtgcaatgtggtaacagggaaattgtaggcaatggggaaaaaa 2994
Query: 524 acaaaagaaaaaaaaaatgatgaaaagcaggctgagccatgtgtctaaaaacgggaagca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 acaaaagaaaaaaaaaatgatgaaaagcaggctgagccatgtgtctaaaaacgggaagca 3054
Query: 584 atgtggtattgggacatctgagcagaagtgcagcacatgtaccaccacaccgtgactgtc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3055 atgtggtattgggacatctgagcagaagtgcagcacatgtaccaccacaccgtgactgtc 3114
Query: 644 aacaaagaaaccacgacctgtgtatgtatgttcgtggtttttgttttcattatccaataa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 aacaaagaaaccacgacctgtgtatgtatgttcgtggtttttgttttcattatccaataa 3174
Query: 704 atacgtattacggaggacggaggggggccggagaaggcacggcattgcagggccaaggca 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3175 atacgtattacggaggacggaggggggccggagaaggcacggcattgcagggccaaggca 3234
Query: 764 agtctcaactctggcttttagctctctgtgatcttaactcangtaattaaccagagggaa 823
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3235 agtctcaactctggcttttagctctctgtgatcttaactcaggtaattaaccagagggaa 3294
Query: 824 agagtt-gaatagagatgaaaaag-tggccaacttttgaagtanaaagaaacagggtnca 881
||||| ||||||||||||||||| |||||||||||||||||| || ||||||||| ||
Sbjct: 3295 -gagtttgaatagagatgaaaaaggtggccaacttttgaagtaaaagaaaacagggtcca 3353
Query: 882 cagtgggagaatatctnctgaatgccttcatgggggtnatacatcctacatttttt-ctc 940
|||||||||| ||||| |||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 3354 cagtgggagattatctcctgaatgccttcatggggtttatacatcctacatttttttctc 3413
Query: 941 a-catac-tgatana-agtttgtacggtttt 968
| ||||| ||||| | |||||||||||||||
Sbjct: 3414 aacatacatgatagatagtttgtacggtttt 3444
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,676
Number of Sequences: 1807
Number of extensions: 12676
Number of successful extensions: 220
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)