BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZD06FM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1343                                                        1566   0.0  

>3x_Contig1343 
          Length = 6877

 Score = 1566 bits (790), Expect = 0.0
 Identities = 834/844 (98%), Gaps = 4/844 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   cttcgatctcagatccaatactgatttctcattattagtgtgaaaccggactttgtatta 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5551 cttcgatctcagatccaatactgatttctcattattagtgtgaaaccggactttgtatta 5610

                                                                        
Query: 148  cgtaccctttccactgtcatatttccaacttctatttatgtcctgttctagttctaatta 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5611 cgtaccctttccactgtcatatttccaacttctatttatgtcctgttctagttctaatta 5670

                                                                        
Query: 208  cactagctccagtctaatggatccttcctccacttttttattttcctttcttacgtcttc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5671 cactagctccagtctaatggatccttcctccacttttttattttcctttcttacgtcttc 5730

                                                                        
Query: 268  ggatgtcttgaaatgcaatattttcgtattttaggttccttctattagtagaagctcttt 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5731 ggatgtcttgaaatgcaatattttcgtattttaggttccttctattagtagaagctcttt 5790

                                                                        
Query: 328  aaggttttaaggttgctttcgattttaaggtcatgtgagaaaagcacgtaagataatgaa 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5791 aaggttttaaggttgctttcgattttaaggtcatgtgagaaaagcacgtaagataatgaa 5850

                                                                        
Query: 388  cgcttgcttggcttggtttaattttgtttcggggcggagctcccctggatcgattggccc 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5851 cgcttgcttggcttggtttaattttgtttcggggcggagctcccctggatcgattggccc 5910

                                                                        
Query: 448  aatctagtccgtccgttctcctactctcgtgtcctttttttttccggatcgtactgcgat 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5911 aatctagtccgtccgttctcctactctcgtgtcctttttttttccggatcgtactgcgat 5970

                                                                        
Query: 508  ccagagattcctttcgtatttgaatttccagatttggccagatcgagacttaagtaatca 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5971 ccagagattcctttcgtatttgaatttccagatttggccagatcgagacttaagtaatca 6030

                                                                        
Query: 568  tttgcttttaactctggtggtacttacagatctagcgatctcattcggttcattgtccca 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031 tttgcttttaactctggtggtacttacagatctagcgatctcattcggttcattgtccca 6090

                                                                        
Query: 628  taaccggtgaagcaagcatgtaatttagaatctcgagacacatgcggcagcaatacgtgg 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6091 taaccggtgaagcaagcatgtaatttagaatctcgagacacatgcggcagcaatacgtgg 6150

                                                                        
Query: 688  agaagaggctaaaccgcttggtatcattntttttttttttaattttggcatttcgtgctt 747
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6151 agaagaggctaaaccgcttggtatcattttttttttttttaattttggcatttcgtgctt 6210

                                                                        
Query: 748  gaataatgtctgagcttctttaggttcagcagtttgggaatacattctaaacaagaattt 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6211 gaataatgtctgagcttctttaggttcagcagtttgggaatacattctaaacaagaattt 6270

                                                                        
Query: 808  gaagaaa-tacctttgttttgaacagaggctggtctatatttagctttttatta-tcttc 865
            ||||||| |||||||||||  ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 6271 gaagaaattacctttgtttgaaacagaggctgttctatatttagc-ttttattattcttc 6329

                                                                        
Query: 866  tagctatttntgggtttttttggctagttggcgatgcttcgaac-tgtgttggtgagaga 924
            ||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6330 tagctatttttgtgtttttttggctagttggcgatgcttcgaacgtgtgttggtgagaga 6389

                
Query: 925  atct 928
            ||||
Sbjct: 6390 atct 6393


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,679
Number of Sequences: 1807
Number of extensions: 11679
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)