BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD07FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig288 1570 0.0
>3x_Contig288
Length = 1699
Score = 1570 bits (792), Expect = 0.0
Identities = 841/854 (98%), Gaps = 3/854 (0%)
Strand = Plus / Plus
Query: 88 tccaatgttttaaactcttggagttaaacccaccccaacatttgtatccgtccacgtata 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tccaatgttttaaactcttggagttaaacccaccccaacatttgtatccgtccacgtata 128
Query: 148 tagcatataacgatagcaaggtgaccatagtccaaaaattgagtacaacagcaataggtg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tagcatataacgatagcaaggtgaccatagtccaaaaattgagtacaacagcaataggtg 188
Query: 208 ctccgataaatcccatacctattctttcattccacaccaaagtgtaactaacaaacatgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctccgataaatcccatacctattctttcattccacaccaaagtgtaactaacaaacatgt 248
Query: 268 tccaaggagcacatatcattaaaacgtagatccctgcatcaaagataccttgtgcttgta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tccaaggagcacatatcattaaaacgtagatccctgcatcaaagataccttgtgcttgta 308
Query: 328 agaaccgctttaaactttcgaatatgatgtaggccggagcaccgagtatactgactcgaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agaaccgctttaaactttcgaatatgatgtaggccggagcaccgagtatactgactcgaa 368
Query: 388 ggaatttcgcggtcatatggattaattctggttcatgcggcattactaaggtcaacaatg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaatttcgcggtcatatggattaattctggttcatgcggcattactaaggtcaacaatg 428
Query: 448 tttcagaccaccaccatataaatccgaacggtatgaatactgtaaatgaaaacatgatac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttcagaccaccaccatataaatccgaacggtatgaatactgtaaatgaaaacatgatac 488
Query: 508 agcgctgcatgtgaacaccaacactgtaataattcccagatccgtaggctaatggacata 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agcgctgcatgtgaacaccaacactgtaataattcccagatccgtaggctaatggacata 548
Query: 568 gtgtatccaaactcgtggctataccttcaaagatagcatacgtaatgtttgtggtcattg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtgtatccaaactcgtggctataccttcaaagatagcatacgtaatgtttgtggtcattg 608
Query: 628 aagccaaagagaccgctgccaattctgtcctccccaaatgacccaccgttaacgagcata 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagccaaagagaccgctgccaattctgtcctccccaaatgacccaccgttaacgagcata 668
Query: 688 ccacggggaacatctgtntcaataagaaagtgaaaatcaatgggattgaatacgatgcca 747
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccacggggaacatctgttccaataagaaagtgaaaatcaatgggattgaatacgatgcca 728
Query: 748 acactttgagttcactatttgcggttactttagcatggcttaaatcttcttctttcatgc 807
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acactttgagtt-actatttgcggttactttagcatggcttaaatcttcttctttcatgc 787
Query: 808 tgcccacatcttgaaata-ctgcggtactgaacctcgactagttactgatattagcgacc 866
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tgcccacatcttgaaatacctgcggtactgaacctcgactagttactgatattagcgacc 847
Query: 867 cacgtcttctgttgggaccggctgtcacactaccgncaggaccacctgcatat-ctctat 925
||||||| |||||||||||| ||| |||||||| ||| ||||||||||||| ||||||
Sbjct: 848 cacgtctcctgttgggaccgcctgcaccactaccgccagcaccacctgcatatgctctat 907
Query: 926 catggaagttttgt 939
||||||||| ||||
Sbjct: 908 catggaagtcttgt 921
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5124
Number of Sequences: 1807
Number of extensions: 5124
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)