BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD07RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1582 0.0
>3x_Contig1708
Length = 19451
Score = 1582 bits (798), Expect = 0.0
Identities = 869/885 (98%), Gaps = 6/885 (0%)
Strand = Plus / Minus
Query: 43 gcttcacttagtaacatttctatatcagattccttcc-cgattttgtcggtggattttgt 101
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16774 gcttcacttagtaacatttctatatcagattccttccacgattttgtcggtggattttgt 16715
Query: 102 aagaatgtaattatctcttggaagtccatcttcattaattcgtctgaccatttcactagg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16714 aagaatgtaattatctcttggaagtccatcttcattaattcgtctgaccatttcactagg 16655
Query: 162 aaagctgcacaaacgaaaacatgaaattcactgagagtagtttgtctggagtctgatgat 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 16654 aaagctgcacaaacgaaaacatgaaattcactgagagtagtttgtctggagtctgaagat 16595
Query: 222 gagggccctgatgacgatgttctcgactttctatccagagaagtcgatgcgtcagacatg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16594 gagggccctgatgacgatgttctcgactttctatccagagaagtcgatgcgtcagacatg 16535
Query: 282 agatcctctgagactatgcttgtctccaaagaagtctcggagaggtatgtatcccacatt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16534 agatcctctgagactatgcttgtctccaaagaagtctcggagaggtatgtatcccacatt 16475
Query: 342 cgtatcaccattgacatttggaactctctcatcaacaaacagttcatccatctgacacta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16474 cgtatcaccattgacatttggaactctctcatcaacaaacagttcatccatctgacacta 16415
Query: 402 aattgtaagaattcaacgtgctcagattcgaaatggctgaataaatcacaatctattctt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16414 aattgtaagaattcaacgtgctcagattcgaaatggctgaataaatcacaatctattctt 16355
Query: 462 ttcaccaactgactgaggtgtttgacttgtttcaatattccaggctgaccatggatgaaa 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16354 ttcaccaactgactgaggtgtttgacttgtttcaatattccaggctgaccatggatgaaa 16295
Query: 522 taatctgtgatttgttccaagagtttggatagacaccagaaacaatccgcttctacatca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16294 taatctgtgatttgttccaagagtttggatagacaccagaaacaatccgcttctacatca 16235
Query: 582 gacaactgctctgcagtcaaatacgtcagcggatctaaactgtaaacgtcatcctttgcc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16234 gacaactgctctgcagtcaaatacgtcagcggatctaaactgtaaacgtcatcctttgcc 16175
Query: 642 gatggtgaaaggtattcggacaaaaacacttggaaaaaaggtgtcactagatcgttgatc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16174 gatggtgaaaggtattcggacaaaaacacttggaaaaaaggtgtcactagatcgttgatc 16115
Query: 702 ccctgtacgtaaccactggcaggatgtcttatggcccaaaaatacaatatccgtttcaat 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16114 ccctgtacgtaaccactggcaggatgtcttatggcccaaaaatacaatatccgtttcaat 16055
Query: 762 gaattatgaactgattcgaattggtacaatggaatatgtgggtttggttctcgg-atgtc 820
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 16054 gaattatgaactgattcgaattggtacaatggaatatgtggg-ttggttctcggtatgtc 15996
Query: 821 aatttcaatttgatgccaagtttgtacatcttttctcatgggtatccgaaaagaattgat 880
|||||||||||||||||||||| |||||| |||||||||| |||| ||||||| ||||
Sbjct: 15995 aatttcaatttgatgccaagttgttacatc-tttctcatggttatcggaaaagatatgat 15937
Query: 881 ctacacccctgcttatatcccagacttttaccggtncaatacctg 925
||||| |||||||||||| |||| |||||| |||| |||||||||
Sbjct: 15936 ctaca-ccctgcttatattccagtctttta-cggttcaatacctg 15894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7020
Number of Sequences: 1807
Number of extensions: 7020
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)