BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZD08FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1481 0.0
>3x_Contig1803
Length = 52241
Score = 1481 bits (747), Expect = 0.0
Identities = 834/856 (97%), Gaps = 7/856 (0%)
Strand = Plus / Minus
Query: 87 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48818 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 48759
Query: 147 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48758 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 48699
Query: 207 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48698 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 48639
Query: 267 ccaactatagacagatgggtactctcacc-tcacctacggtttactgcaaattagagcat 325
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 48638 ccaactatagacagatgggtactctcaccctcacctacggtttactgcaaattagagcat 48579
Query: 326 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48578 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 48519
Query: 386 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48518 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 48459
Query: 446 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48458 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 48399
Query: 506 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48398 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 48339
Query: 566 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48338 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 48279
Query: 626 aacttgctctgcatcatgaccaacctcatccgccatattcttaaganatgttgaacaaca 685
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 48278 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 48219
Query: 686 gctattggagtccatggtgctcaattccacgaatttattatcatacctccattgtgagtg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48218 gctattggagtccatggtgctcaattccacgaatttattatcatacctccattgtgagtg 48159
Query: 746 tgagcaacatattatgatcactagacattaattatttaataattattaacagtttnttaa 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 48158 tgagcaacatattatgatcactagacattaattatttaataattattaacagttt-ttaa 48100
Query: 806 gtggagntnncttcttatgtcttcttttctaaaattttgttcgaacatcttttctggtga 865
|||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 48099 gtggagttct-ttcttatgtcttcttttctaaattttgtttcgaacatcttttctggtga 48041
Query: 866 tttnaacac-agctacacagtcttcggtaatccctttatatnccttc-gnngcttg-tat 922
||| ||||| ||||||||||||| | ||||||||| ||| ||||| | ||||| |||
Sbjct: 48040 ttt-aacacaagctacacagtctcggttaatcccttattattccttctgtggcttgttat 47982
Query: 923 ttactctcatgcgtga 938
||||||||||||||||
Sbjct: 47981 ttactctcatgcgtga 47966
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5537
Number of Sequences: 1807
Number of extensions: 5537
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)